PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp5g23300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | bHLH | ||||||||
Protein Properties | Length: 219aa MW: 24388.6 Da PI: 5.4152 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.7 | 3.1e-11 | 110 | 156 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +a n++E+rRR +i++++e+L++l P++ kK + a+ L veYI+s+ Tp5g23300 110 QARNIAEKRRRTDIKTKIENLKQLTPNC-----KKRDIASSLDCIVEYIRSM 156 689*************************.....9****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.2E-11 | 104 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.554 | 107 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.09E-11 | 109 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.4E-8 | 110 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.03E-9 | 110 | 157 | No hit | No description |
SMART | SM00353 | 2.2E-8 | 113 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MDNNDQESLQ FWSALLQSLA GSDPKNDLCP ETSNPILVMS TSMAIDVPPE PSHAPGDGNK 60 AGPRNDVAEI GDKNVNETGQ RSTEKQIEEE NKEGAKEETK SLGKRPRTNQ ARNIAEKRRR 120 TDIKTKIENL KQLTPNCKKR DIASSLDCIV EYIRSMKLYV ESQSMGPMLP LGMKMDFPAP 180 WFPFFHPNFI MPPQLPPQPP PPLPPFNGFT SGETSGQNQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp5g23300 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022568090.1 | 3e-96 | putative transcription factor bHLH056 isoform X1 | ||||
TrEMBL | A0A3P6BJX1 | 3e-94 | A0A3P6BJX1_BRACM; Uncharacterized protein | ||||
STRING | Bo6g097200.1 | 9e-95 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15740 | 7 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28800.1 | 1e-13 | bHLH family protein |