PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g23210
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 319aa    MW: 35541 Da    PI: 7.8937
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g23210genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.23.6e-15235259226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                ktelC+ +++tGtC+yGd C+FaHg
  Tp5g23210 235 KTELCNKWQETGTCPYGDHCQFAHG 259
                9***********************8 PP
2zf-CCCH21.25e-07272297126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                ykte Cr  +++ +C+yG rC+F H+
  Tp5g23210 272 YKTEVCRMVLAGDICPYGHRCHFRHS 297
                9**********55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.1E-18228266IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-11230265IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.23233261IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-9233260IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-12235259IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-12267300IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-9267302IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.272271299IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5271298IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MENEIAPFTY SGSSAGVVGI MKSHGEPSGG GVVTPSLLCD QHYHSSRNVM QQRQDMVNRE  60
ALCYTRLHEA SLEAEVLRLE NTELRSMNRH LKKELDQLIR SSIQNRLNYD RVPLRMLSNL  120
SIGGNRDADE AENQNRAANR DDVSDESPTS VIENDDLNRS SLPKSISVRS SGYSKTSQGG  180
GGAAAAAQCG KSRGTIPKPG TCEQLTTTQK VYVRGGKKEE EEEIEVEVYN QGMTKTELCN  240
KWQETGTCPY GDHCQFAHGI KELRPVIRHP RYKTEVCRMV LAGDICPYGH RCHFRHSLSE  300
QEKLMAAGCK PNKPFKLVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A3e-22235300570Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g23210
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391172.20.0zinc finger CCCH domain-containing protein 15 isoform X1
RefseqXP_024008032.10.0zinc finger CCCH domain-containing protein 15 isoform X2
RefseqXP_024008038.10.0zinc finger CCCH domain-containing protein 15 isoform X3
SwissprotQ9C9F51e-154C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A397YQ200.0A0A397YQ20_BRACM; Uncharacterized protein
TrEMBLV4KMB60.0V4KMB6_EUTSA; Uncharacterized protein
STRINGXP_006391172.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72872339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.11e-154C3H family protein