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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Tp5g23120 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 283aa MW: 31768.1 Da PI: 9.7414 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Tp5g23120 | genome | thellungiella | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 307.7 | 4.1e-94 | 2 | 283 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki..rernlalsekkaavaerd......................maflqrdkalaernkalve 76
md+dg +rn+gyyep+ ++k nlg+ql+ si +r++k+ ++n +++++++ + m++ ++l++ +
Tp5g23120 2 MDEDGLSNRNWGYYEPS-QFKPNLGFQLIPSIVDRNEKPflCTQNPNFITPNNGYRGSSssssssnvmsfardysvsdapfMSY----SWLNQ------H 90
9***************9.*********************997777778888888855553344444433332244444444444....55555......6 PP
GAGA_bind 77 rdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskk 176
rd+k+++ + + + + +++ + ++ +q q +p + +++e+ ++++++ + + pk+kk++k k+
Tp5g23120 91 RDSKFFNSSINPSN------HHSLLVPDNSRTHPMQL---LQ--------------IPKPEVGEVDESLKRTQCSGG-DRAGPKAKKERKLKD------- 159
66666666553332......12334555555555554...11..............122223456777888888855.456789999999888....... PP
GAGA_bind 177 kvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeG 276
+ +++++++ +ksi++v+ngvs+D++ lPvPvCsCtG+++ CY+WG+GGWqSaCCtt++S+yPLP+stkrrgaRiagrKmSqgaf+k+LekL+a+G
Tp5g23120 160 -CNVPRVQRERSPLRKSIEMVINGVSMDIGCLPVPVCSCTGMPQPCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFRKVLEKLSADG 258
.4455555566789************************************************************************************** PP
GAGA_bind 277 ydlsnpvDLkdhWAkHGtnkfvtir 301
+d+snp+DLk+hWAkHGtnkfvtir
Tp5g23120 259 FDFSNPIDLKSHWAKHGTNKFVTIR 283
************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 283 aa
Download sequence Send
to blast |
MMDEDGLSNR NWGYYEPSQF KPNLGFQLIP SIVDRNEKPF LCTQNPNFIT PNNGYRGSSS 60
SSSSSNVMSF ARDYSVSDAP FMSYSWLNQH RDSKFFNSSI NPSNHHSLLV PDNSRTHPMQ 120
LLQIPKPEVG EVDESLKRTQ CSGGDRAGPK AKKERKLKDC NVPRVQRERS PLRKSIEMVI 180
NGVSMDIGCL PVPVCSCTGM PQPCYRWGCG GWQSACCTTN VSMYPLPMST KRRGARIAGR 240
KMSQGAFRKV LEKLSADGFD FSNPIDLKSH WAKHGTNKFV TIR
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC012563 | 1e-133 | AC012563.7 Arabidopsis thaliana chromosome 1 BAC T23K23 genomic sequence, complete sequence. |
| GenBank | BT022117 | 1e-133 | BT022117.1 Arabidopsis thaliana At1g68120 mRNA, complete cds. |
| GenBank | CP002684 | 1e-133 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
