PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp5g21530

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

bHLH

Protein Properties

Length: 313aa MW: 33674.8 Da PI: 6.1254

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp5g21530	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.5	6.4e-10	225	266	9	55
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++RR+ri +++ L+el+P+ +K++ +++LekA+ Y+k Lq Tp5g21530 225 AKNRRERISERLKILQELVPNG-----TKVDLVTMLEKAISYVKFLQ 266 69****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.32	216	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.8E-12	217	273	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.61E-12	218	270	No hit	No description
SuperFamily	SSF47459	2.09E-13	218	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.0E-12	222	271	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.8E-7	225	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048766	Biological Process	root hair initiation
GO:0005739	Cellular Component	mitochondrion
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MALVNDHPNE PNYISKQNSS SSEDLSSPEN YGLDHPEAAY AGGGGGGGSA SSSSTMNSDH 60 HQENHQGFVF YPSGEAVEDQ NSLLDFNGSS FLNFDHNDHH ESFPPPTISC GGGGGGGGGG 120 FSFLEGNNMS YGFTNWSQHH MDIISPRPIE TPGTNQDHKD WLYSDSTVVT TGSRRESISP 180 KSAGNKRSYT GESTQTSSKK LISGSNGKAK PKPATSPKDP QSLAAKNRRE RISERLKILQ 240 ELVPNGTKVD LVTMLEKAIS YVKFLQVQVK VLATDEFWPA QGGKAPDISQ VKDAIDAILS 300 SSQRDRNSNL ITN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp5g21530

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013741462.1	0.0	transcription factor bHLH83
Swissprot	Q9C707	1e-156	BH083_ARATH; Transcription factor bHLH83
TrEMBL	A0A3N6R4D0	0.0	A0A3N6R4D0_BRACR; Uncharacterized protein
STRING	Bo00835s050.1	1e-180	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4260	28	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66470.1	1e-153	ROOT HAIR DEFECTIVE6

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Coego A, et al. The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression. Plant J., 2014. 77(6): p. 944-53 [PMID:24456507] Lin CY, et al. Pathways involved in vanadate-induced root hair formation in Arabidopsis. Physiol Plant, 2015. 153(1): p. 137-48 [PMID:24833217] Grierson C,Nielsen E,Ketelaarc T,Schiefelbein J Root hairs. Arabidopsis Book, 2014. 12: p. e0172 [PMID:24982600] Kim CM,Dolan L ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon. PLoS Genet., 2016. 12(8): p. e1006211 [PMID:27494519] Moro CF, et al. S-nitrosoglutathione promotes cell wall remodelling, alters the transcriptional profile and induces root hair formation in the hairless root hair defective 6 (rhd6) mutant of Arabidopsis thaliana. New Phytol., 2017. 213(4): p. 1771-1786 [PMID:27880005] Bahmani R,Kim DG,Kim JA,Hwang S The Density and Length of Root Hairs Are Enhanced in Response to Cadmium and Arsenic by Modulating Gene Expressions Involved in Fate Determination and Morphogenesis of Root Hairs in Arabidopsis. Front Plant Sci, 2016. 7: p. 1763 [PMID:27933081] Liao X,Lovett B,Fang W,St Leger RJ Metarhizium robertsii produces indole-3-acetic acid, which promotes root growth in Arabidopsis and enhances virulence to insects. Microbiology (Reading, Engl.), 2017. 163(7): p. 980-991 [PMID:28708056] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944]