PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp5g21450 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | MYB | ||||||||
Protein Properties | Length: 243aa MW: 27645.1 Da PI: 5.2261 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.4 | 5.3e-16 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll +++ ++G g W++++++ g++R++k+c++rw++yl Tp5g21450 10 KGAWTAEEDCLLRQCIDKYGEGKWHLVPSRTGLNRCRKSCRLRWLNYL 57 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.4 | 4.5e-15 | 63 | 108 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+ + +E +ll++++k+lG++ W++Ia +++ gRt++++k++w+++l Tp5g21450 63 KGKLSSDEVDLLYRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTHL 108 678899****************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.285 | 5 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.03E-27 | 7 | 104 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.0E-21 | 7 | 60 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.8E-15 | 9 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.8E-15 | 10 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.12E-10 | 12 | 57 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.6E-22 | 61 | 111 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.233 | 62 | 112 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-14 | 62 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-13 | 63 | 108 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.12E-10 | 67 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MDAPWNRLRK GAWTAEEDCL LRQCIDKYGE GKWHLVPSRT GLNRCRKSCR LRWLNYLKPS 60 IKKGKLSSDE VDLLYRLHKL LGNRWSLIAG RLPGRTANDV KNYWNTHLNK KPDLSCKTEM 120 EERNPTGSAA TPDPKVNVIK PQPRSFCSNN HLSRVNSLPE VEVNVSITGN NDEEVLYDLV 180 ENVMDGESMW WESLLEENRG ADAVDPAGMA IDEAGTSLMN SSSSMFDTEQ LWSLYNEETG 240 ELD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-24 | 8 | 113 | 5 | 109 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp5g21450 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM403451 | 1e-103 | KM403451.1 Brassica rapa cultivar Zi He anthocyanin R2R3-MYB transcription factor (MYB3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018461613.1 | 1e-106 | PREDICTED: transcription factor MYB114-like | ||||
Swissprot | Q9FNV9 | 2e-90 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | E5D8F5 | 5e-98 | E5D8F5_BRAOB; MYB2 | ||||
STRING | XP_010513543.1 | 1e-101 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 8e-93 | myb domain protein 113 |
Publications ? help Back to Top | |||
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