PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g18120
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 166aa    MW: 18849.6 Da    PI: 9.9609
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g18120genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.31.6e-072371553
        AP2 15 WvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
               +vAeIr p e   +kr +lg f t++eAaka+ + r+++
  Tp5g18120  2 FVAEIRNPFE---KKRMWLGAFSTEDEAAKAYQRSRREI 37
               69*****644...5**********99******9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003800.0014153IPR001471AP2/ERF domain
PROSITE profilePS5103212.207147IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-11245IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-8239IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MFVAEIRNPF EKKRMWLGAF STEDEAAKAY QRSRREIDEQ SGLVNQMGLV KPEEKDVNLT  60
KSEGLLPLAN GKMVRTEISV KKTFGVGFAN NIAEEEEAWG RSCGFLARLD TLNEHPKRSS  120
NVQERAVGDL MSLAPNRFGS MKVFIGSDNL ESMLFRRLCR RFVKSK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g18120
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002891477.18e-17ethylene-responsive transcription factor ERF117
SwissprotQ9M9B22e-17EF117_ARATH; Ethylene-responsive transcription factor ERF117
TrEMBLA0A178WIZ68e-16A0A178WIZ6_ARATH; CRF9
STRINGBostr.26675s0265.1.p1e-19(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49120.16e-20ERF family protein