PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G49120.1 | ||||||||
Common Name | CRF9, ERF117, F27J15.11 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 329aa MW: 37478 Da PI: 4.6762 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.2 | 1.4e-15 | 85 | 132 | 1 | 52 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 sg+kGVr+++ +g+++AeIr p e +kr +lg+f t+eeAa+a+ + +++ AT1G49120.1 85 SGFKGVRRRP-WGKFAAEIRNPFE---KKRKWLGTFPTEEEAAEAYQKSKRE 132 79********.**********644...5******************887766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.24E-20 | 85 | 126 | No hit | No description |
Pfam | PF00847 | 1.1E-9 | 85 | 126 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-15 | 85 | 133 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 9.6E-17 | 86 | 146 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.309 | 86 | 143 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-19 | 87 | 133 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-8 | 87 | 98 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-8 | 109 | 125 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MISFREENID LNLIKTISVI CNDPDATDSS SDDESISGNN PRRQIKPKPP KRYVSKICVP 60 TLIKRYENVS NSTGNKAAGN RKTSSGFKGV RRRPWGKFAA EIRNPFEKKR KWLGTFPTEE 120 EAAEAYQKSK REFDERLGLV KQEKDLVDLT KPCGVRKPEE KEVTEKSNCK KVNKRIVTDQ 180 KPFGCGYNAD HEEEGVISKM LEDPLMTSSI ADIFGDSAVE ANDIWVDYNS VEFISIVDDF 240 KFDFVENDRV GKEKTFGFKI GDHTKVNQHA KIVSTNGDLF VDDLLDFDPL IDDFKLEDFP 300 MDDLGLLGDP EDDDFSWFNG TTDWIDKFL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 90 | 110 | RRRPWGKFAAEIRNPFEKKRK |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18402490 | 0.0 | ||||
Expression Atlas | AT1G49120 | - | ||||
AtGenExpress | AT1G49120 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G49120.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G49120 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC016041 | 0.0 | AC016041.5 Genomic sequence for Arabidopsis thaliana BAC F27J15 from chromosome I, complete sequence. | |||
GenBank | AY560840 | 0.0 | AY560840.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g49120) mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_175338.1 | 0.0 | Integrase-type DNA-binding superfamily protein | ||||
Swissprot | Q9M9B2 | 0.0 | EF117_ARATH; Ethylene-responsive transcription factor ERF117 | ||||
TrEMBL | A0A178WIZ6 | 0.0 | A0A178WIZ6_ARATH; CRF9 | ||||
STRING | AT1G49120.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16547 | 10 | 13 | Representative plant | OGRP6 | 16 | 1718 |
Link Out ? help Back to Top | |
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Phytozome | AT1G49120.1 |
Entrez Gene | 841335 |
iHOP | AT1G49120 |
wikigenes | AT1G49120 |
Publications ? help Back to Top | |||
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