PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g16120
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family HD-ZIP
Protein Properties Length: 836aa    MW: 91995.8 Da    PI: 5.9088
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g16120genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.21.2e-172482357
               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
               k  ++t+eq+e+Le+++ ++++p+  +r++L +++    +++ +q+kvWFqNrR ++k+
  Tp5g16120 24 KYVRYTAEQVEALERVYSECPKPTSLRRQQLIRECpilaHIEPKQIKVWFQNRRCRDKQ 82
               56789***************************************************996 PP
2START160.71.1e-501603672204
                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS
      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 
                +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+ +++ a+ra+g+v  +++   +e+l+d++ W +++++ e+      g  g+++l +++++
  Tp5g16120 160 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQRCNVVAARACGLVSLEPM-KIAEILKDRPSWFRDCRSLEVFTMFPAGngGTIELVYMQTY 258
                68999*****************************************************.7777777777***********999999999*********** PP

                TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHH CS
      START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegakt 195
                a+++l+p Rdf+++Ry+  l+ g++v++++S++     p+    +++vRae+lpSg+li+p+++g+s +++v+h++l+g++++ +lr+l++s+ + ++k+
  Tp5g16120 259 APTTLAPaRDFWTLRYTSNLENGSLVVCERSLSGSGAGPNassAAQFVRAEMLPSGYLIRPCDGGGSIIHIVDHINLEGWSVPDVLRPLYESSKVVAQKM 358
                *********************************9999998888899****************************************************** PP

                HHHHTXXXX CS
      START 196 wvatlqrqc 204
                + a+l++ +
  Tp5g16120 359 TIAALRYIR 367
                ****99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.0461983IPR001356Homeobox domain
SMARTSM003891.7E-142187IPR001356Homeobox domain
SuperFamilySSF466895.99E-162186IPR009057Homeodomain-like
CDDcd000868.62E-152481No hitNo description
PfamPF000463.8E-152582IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-172679IPR009057Homeodomain-like
CDDcd146863.85E-676115No hitNo description
Gene3DG3DSA:1.20.5.1707.1E-480129No hitNo description
PROSITE profilePS5084827.152150378IPR002913START domain
CDDcd088755.33E-70154370No hitNo description
Gene3DG3DSA:3.30.530.203.1E-20158363IPR023393START-like domain
SMARTSM002342.8E-40159369IPR002913START domain
PfamPF018522.0E-48160367IPR002913START domain
SuperFamilySSF559618.79E-35160370No hitNo description
PfamPF086701.1E-46688835IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 836 aa     Download sequence    Send to blast
MAMAVANHHE SGDNINRHLD SSGKYVRYTA EQVEALERVY SECPKPTSLR RQQLIRECPI  60
LAHIEPKQIK VWFQNRRCRD KQRREASRLQ SVNRKLSAMN KLLMEENDRL QKQVSHLVCE  120
NGYMKQQLTT VGTDASCDSV DPSPQHSLRD ANSPAGLLAI AEETLAEFLS KATGTAVDWV  180
QMPGMKPGPD SVGIFAISQR CNVVAARACG LVSLEPMKIA EILKDRPSWF RDCRSLEVFT  240
MFPAGNGGTI ELVYMQTYAP TTLAPARDFW TLRYTSNLEN GSLVVCERSL SGSGAGPNAS  300
SAAQFVRAEM LPSGYLIRPC DGGGSIIHIV DHINLEGWSV PDVLRPLYES SKVVAQKMTI  360
AALRYIRQIA HETNGEVVHE LGRQPAVLRT FSQILSRGFN DAVNGFNDDG WSVMHCNGAE  420
DIIVAVNSTK HLNSISDSLS FLGGVLCAKA SMLLQNVPPA VLIRFLREHR SEWADFNVDA  480
YSAATLKAGG FAYPGMRPTR FTGSQIIMPL GHTIENEEML EVVRLEGHSL VQEDAFVSRD  540
VHLLQICTGI DENAVGACSE LVFAPINEMF PDDAPLVPSG FRVIPVDPKT GDVQDLLTAN  600
HQTLDLTSSL DVDLAPENGS NLSSRCILTI AFQFSFENNL QENVANMACQ YVRSVISSVQ  660
RVAMAVSPSG LNPVSGSKLS PGSPEAVTLA LWICQSYNRQ LGSNLLRTDS LGGDSLLRQL  720
WDHQDAILCC SLKPQPVFMF ANQAGLDMLE TTLVALQDIT LEKIFDESGR KAFCPDFAKL  780
MQQGFACLPS GISVSTMGRH VTYEQAVSWK VFAESKDNNN NSIHCLAFLF VNWSFL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g16120
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009150087.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA-like isoform X1
RefseqXP_013642495.10.0homeobox-leucine zipper protein REVOLUTA-like isoform X1
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A3P5Z0W90.0A0A3P5Z0W9_BRACM; Uncharacterized protein
STRINGBostr.21132s0011.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]