PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp5g14060

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

LBD

Protein Properties

Length: 328aa MW: 37447.8 Da PI: 5.6783

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp5g14060	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	122	3.2e-38	38	137	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 aCaaCk++rr+Ca+dC+lapyfpaeqpk f+nvh+lFG++ ++k+l++l+e+++++am+s+++++ +r r+Pv+G++g+ ++lq + +++el++++++ Tp5g14060 38 ACAACKYQRRRCAADCPLAPYFPAEQPKLFQNVHRLFGVRSIVKILENLDESQKPEAMKSIIFQSYVRDRNPVHGCLGITQHLQYMIFLAQEELKSVNSQ 137 7**********************************************************************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.068	37	138	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.9E-35	38	135	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009556	Biological Process	microsporogenesis
GO:0009786	Biological Process	regulation of asymmetric cell division
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MRPIKIIHHL TGLLERFLDR ILIVFILYMT LKGGSSGACA ACKYQRRRCA ADCPLAPYFP 60 AEQPKLFQNV HRLFGVRSIV KILENLDESQ KPEAMKSIIF QSYVRDRNPV HGCLGITQHL 120 QYMIFLAQEE LKSVNSQLQL YRNQQNNVQN HHNTHNQMIH EIGEKQEDVT SQLDLGMGLT 180 VNNNQNNLTS FFNPLSVSET QQQPQMSYTY SCSEVNNNGY SPPAYTDSCK EILANNNDNN 240 ASLAWGPNGF PYHHHNNGLS NQNEQCNEMK NSNGVMAIQS QLVNLQMVSN QQEEEEEDAH 300 EYDEIHQFLE IIDEKQSFAD TKEPNASS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-24	34	141	7	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-24	34	141	7	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp5g14060

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013591362.1	1e-172	PREDICTED: LOB domain-containing protein 27-like isoform X1
Refseq	XP_013591366.1	1e-172	PREDICTED: LOB domain-containing protein 27-like isoform X2
Swissprot	Q9STS6	1e-139	LBD27_ARATH; LOB domain-containing protein 27
TrEMBL	A0A078J5G0	1e-170	A0A078J5G0_BRANA; BnaC01g42830D protein
STRING	Bo1g072490.1	1e-167	(Brassica oleracea)
STRING	XP_006292170.1	1e-167	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6303	27	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	1e-128	LOB domain-containing protein 27

Publications ? help Back to Top
Kim MJ,Kim M,Kim J Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis. Plant Signal Behav, 2015. 10(8): p. e1044193 [PMID:26252070] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]