PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp5g11690

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

LBD

Protein Properties

Length: 348aa MW: 39050.1 Da PI: 7.0187

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp5g11690	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	54.3	4e-17	58	121	37	100
DUF260 37 FGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 FG s+v+ ll++l++++redam+s+++eA+ar+ dPvy + ++i +lq+ql+++ +l+ +++e Tp5g11690 58 FGPSRVTTLLNHLHPSQREDAMHSIAFEAQARIIDPVYICSRLIYNLQRQLKEVTDQLQIARNE 121 9*********************************************************999987 PP
2	DUF260	41.8	3.1e-13	182	253	7	78
DUF260 7 vlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 + +rkC+++C++apyf e+++kf+++ ++ +++ + + + +p++ r+ am+ l++eAe r d y +++ Tp5g11690 182 MSQRKCPENCIFAPYFSGENRQKFKIISEFRSTNYIKDIFDIVPQNLRQVAMDGLLFEAETRRADKFYVSAA 253 46899**********************999999999**********************9997766555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	11.204	11	122	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-14	57	119	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	9.457	175	276	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.0E-12	182	254	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MNGAKQSVEA VRCQNASVEE RSALREATAR AAVDEAEARI KLALRNQEIF YPKALARFGP 60 SRVTTLLNHL HPSQREDAMH SIAFEAQARI IDPVYICSRL IYNLQRQLKE VTDQLQIARN 120 ELASYNIVPT LETPPPVTYQ PNHHNLMMMH VVSSAVLKFT ERNMPPCGVY LHMSQRKCPQ 180 HMSQRKCPEN CIFAPYFSGE NRQKFKIISE FRSTNYIKDI FDIVPQNLRQ VAMDGLLFEA 240 ETRRADKFYV SAATTYPSSS SLVMHDPQQH QSFASGSNGI CFGIINHNES SGVEQHYHYV 300 GGLVGVDSQQ PQGFAGCSNR IGDNSEPFGV EQSGVLQPGE INEPHGDI

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MNGAKQSVEA VRCQNASVEE RSALREATAR AAVDEAEARI KLALRNQEIF YPKALARFGP  60
SRVTTLLNHL HPSQREDAMH SIAFEAQARI IDPVYICSRL IYNLQRQLKE VTDQLQIARN  120
ELASYNIVPT LETPPPVTYQ PNHHNLMMMH VVSSAVLKFT ERNMPPCGVY LHMSQRKCPQ  180
HMSQRKCPEN CIFAPYFSGE NRQKFKIISE FRSTNYIKDI FDIVPQNLRQ VAMDGLLFEA  240
ETRRADKFYV SAATTYPSSS SLVMHDPQQH QSFASGSNGI CFGIINHNES SGVEQHYHYV  300
GGLVGVDSQQ PQGFAGCSNR IGDNSEPFGV EQSGVLQPGE INEPHGDI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-14	58	125	47	114	LOB family transfactor Ramosa2.1
5ly0_B	4e-14	58	125	47	114	LOB family transfactor Ramosa2.1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp5g11690

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189190	1e-39	AC189190.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB002G19, complete sequence.
GenBank	AP000423	1e-39	AP000423.1 Arabidopsis thaliana chloroplast DNA, complete genome, ecotype: Columbia.
GenBank	AP009366	1e-39	AP009366.1 Aethionema cordifolium chloroplast DNA, complete sequence.
GenBank	AP009368	1e-39	AP009368.1 Olimarabidopsis pumila chloroplast DNA, complete sequence.
GenBank	AP009369	1e-39	AP009369.1 Arabis hirsuta chloroplast DNA, complete sequence.
GenBank	AP009372	1e-39	AP009372.1 Crucihimalaya wallichii chloroplast DNA, complete sequence.
GenBank	AP009373	1e-39	AP009373.1 Draba nemorosa chloroplast DNA, complete sequence.
GenBank	AP009374	1e-39	AP009374.1 Lepidium virginicum chloroplast DNA, complete sequence.
GenBank	AP009375	1e-39	AP009375.1 Lobularia maritima chloroplast DNA, complete sequence.
GenBank	AP009376	1e-39	AP009376.1 Nasturtium officinale chloroplast DNA, complete sequence.
GenBank	AY096798	1e-39	AY096798.1 Arabidopsis thaliana At2g07707 mRNA sequence.
GenBank	DQ231548	1e-39	DQ231548.1 Brassica rapa subsp. pekinensis chloroplast sequence.
GenBank	EF011018	1e-39	EF011018.1 Arabidopsis thaliana ecotype Ws-2 cytoskeleton assembly control protein Sla1-like mRNA, complete sequence.
GenBank	GQ861354	1e-39	GQ861354.1 Brassica napus strain ZY036 chloroplast, complete genome.
GenBank	HF934132	1e-39	HF934132.1 Arabis alpina complete chloroplast genome.
GenBank	JQ806762	1e-39	JQ806762.1 Pachycladon cheesemanii chloroplast, complete genome.
GenBank	LT161984	1e-39	LT161984.1 Arabidopsis suecica chloroplast genome, complete sequence, isolate AS459.
GenBank	LT161985	1e-39	LT161985.1 Arabidopsis suecica chloroplast genome, complete sequence, isolate ASO5.
GenBank	LT161986	1e-39	LT161986.1 Arabidopsis suecica chloroplast genome, complete sequence, isolate ASS3.
GenBank	LT161987	1e-39	LT161987.1 Arabidopsis umezawana chloroplast genome, complete sequence, isolate 504865.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50510.1	8e-25	LOB domain-containing protein 28