PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp5g02730 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | ERF | ||||||||
Protein Properties | Length: 254aa MW: 28117.8 Da PI: 5.1873 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.8 | 6.4e-19 | 70 | 119 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a+++++g Tp5g02730 70 SYRGVRKRS-WGKWVSEIREPKK---KSRIWLGTYPTAEMAARAHDVAALAIKG 119 6*****888.**********854...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.9E-31 | 70 | 128 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.578 | 70 | 127 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.1E-13 | 70 | 119 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.3E-36 | 70 | 133 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-21 | 70 | 127 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.2E-10 | 71 | 82 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.05E-31 | 71 | 129 | No hit | No description |
PRINTS | PR00367 | 1.2E-10 | 93 | 109 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MEKQINIESS ATHHHHQGNN ASVITTSTIA AVTSSSESWS SPKRSLLQDN EAGGKRRKSN 60 GGEDNANPTS YRGVRKRSWG KWVSEIREPK KKSRIWLGTY PTAEMAARAH DVAALAIKGN 120 SGYLNFPELS GLLPRPVSCS PKDIQAAAAK AAEATWQEPV ITEKLADELS HSELSSAQCS 180 STSSSFVFSS DTSETSSTDK ESNEETVFDL PDLFTEGLMN QNDAFRYYDS TFTWQLYGED 240 VVFRLEEPFT WLHD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-15 | 65 | 127 | 9 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00414 | DAP | Transfer from AT3G60490 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp5g02730 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189319 | 0.0 | AC189319.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036H01, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009116730.1 | 1e-131 | PREDICTED: ethylene-responsive transcription factor ERF035 | ||||
Swissprot | Q9M210 | 1e-113 | ERF35_ARATH; Ethylene-responsive transcription factor ERF035 | ||||
TrEMBL | A0A397YCH9 | 1e-130 | A0A397YCH9_BRACM; Uncharacterized protein | ||||
TrEMBL | M4CTJ5 | 1e-130 | M4CTJ5_BRARP; Uncharacterized protein | ||||
STRING | Bra007539.1-P | 1e-130 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM185 | 28 | 283 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60490.1 | 5e-98 | ERF family protein |
Publications ? help Back to Top | |||
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