PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G60490.1
Common NameERF035, T8B10.150
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 256aa    MW: 28216.1 Da    PI: 5.1649
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G60490.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-1870119255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  AT3G60490.1  70 SYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKG 119
                  6*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.15670127IPR001471AP2/ERF domain
PfamPF008476.3E-1370119IPR001471AP2/ERF domain
SMARTSM003809.1E-3670133IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-3070128IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2170127IPR016177DNA-binding domain
PRINTSPR003672.0E-107182IPR001471AP2/ERF domain
CDDcd000184.81E-3271129No hitNo description
PRINTSPR003672.0E-1093109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
PO:0009005anatomyroot
PO:0009046anatomyflower
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0007611developmental stagepetal differentiation and expansion stage
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGKQINIESS ATHHQDNIVS VITATISSSS VVTSSSDSWS TSKRSLVQDN DSGGKRRKSN  60
VSDDNKNPTS YRGVRMRSWG KWVSEIREPR KKSRIWLGTY PTAEMAARAH DVAALAIKGN  120
SGFLNFPELS GLLPRPVSCS PKDIQAAATK AAEATTWHKP VIDKKLADEL SHSELLSTAQ  180
SSTSSSFVFS SDTSETSSTD KESNEETVFD LPDLFTDGLM NPNDAFCLCN GTFTWQLYGE  240
EDVGFRFEEP FNWQND
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-16711271572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.344380.0root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO306952120.0
Genevisible251420_at0.0
Expression AtlasAT3G60490-
AtGenExpressAT3G60490-
ATTED-IIAT3G60490-
Functional Description ? help Back to Top
Source Description
TAIRencodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00414DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G60490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G60490
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1386460.0AL138646.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T8B10.
GenBankAY5608480.0AY560848.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At3g60490) mRNA, complete cds.
GenBankBT0294580.0BT029458.1 Arabidopsis thaliana At3g60490 mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_191608.10.0Integrase-type DNA-binding superfamily protein
SwissprotQ9M2100.0ERF35_ARATH; Ethylene-responsive transcription factor ERF035
TrEMBLA0A178VLW40.0A0A178VLW4_ARATH; Uncharacterized protein
STRINGAT3G60490.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Representative plantOGRP6161718
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Dal Bosco C, et al.
    Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.
    J. Biol. Chem., 2004. 279(2): p. 1060-9
    [PMID:14576160]
  3. Fey V, et al.
    Retrograde plastid redox signals in the expression of nuclear genes for chloroplast proteins of Arabidopsis thaliana.
    J. Biol. Chem., 2005. 280(7): p. 5318-28
    [PMID:15561727]
  4. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  5. Nakano T,Suzuki K,Fujimura T,Shinshi H
    Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
    Plant Physiol., 2006. 140(2): p. 411-32
    [PMID:16407444]
  6. Brady SM, et al.
    A stele-enriched gene regulatory network in the Arabidopsis root.
    Mol. Syst. Biol., 2011. 7: p. 459
    [PMID:21245844]