PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp5g02120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | MYB | ||||||||
Protein Properties | Length: 296aa MW: 32787.1 Da PI: 6.8551 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.1 | 3.5e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+lv+++k+ g+W+t ++ g+ R++k+c++rw +yl Tp5g02120 14 KGPWTPEEDEILVEYIKKNSHGSWRTLPKNAGLLRCGKSCRLRWTNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53.9 | 4.1e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++l v++++ lG++ W++Ia+ ++ gRt++++k+ w+++l Tp5g02120 67 RGPFTPEEEKLVVQLHAILGNR-WAAIAAQLP-GRTDNEIKNLWNTHL 112 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.8E-24 | 5 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.599 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.59E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.4E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.36E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.102 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-26 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.7E-16 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.34E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MGRTPCCDKK GLKKGPWTPE EDEILVEYIK KNSHGSWRTL PKNAGLLRCG KSCRLRWTNY 60 LRPDIKRGPF TPEEEKLVVQ LHAILGNRWA AIAAQLPGRT DNEIKNLWNT HLKKRLLSMG 120 LDPKTHEPLP SYGLAKQAPA SPTTRHMAQW ESARLEAEAR LSRESMLFNP TSGGGGKSDC 180 DHFLRIWNSE IGEAFRNLAP FDESITSQSP CSMTTSSSSA LPKSSTNSCV GREIVMEIHG 240 SDSSPCSNNL EDVSSDSALQ LLLDFPISDD DMSFLEENIG SYTESTVGVV SMVSKF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-29 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00114 | ampDAP | Transfer from AT3G61250 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp5g02120 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006402502.1 | 0.0 | transcription factor MYB41 | ||||
Swissprot | Q9M2D9 | 0.0 | MYB17_ARATH; Transcription factor MYB17 | ||||
TrEMBL | V4L0Z8 | 0.0 | V4L0Z8_EUTSA; Uncharacterized protein | ||||
STRING | XP_006402502.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6982 | 26 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61250.1 | 1e-171 | myb domain protein 17 |