PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp5g00190 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | HSF | ||||||||
Protein Properties | Length: 261aa MW: 30279 Da PI: 6.4266 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 108.2 | 6.3e-34 | 16 | 108 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k++e++ d+++++++sws+ g sfvv+d+++f+ ++Lp yFkh+nf+SFvRQLn+YgF+k++ e+ weF ++ F g+++ll++i+ Tp5g00190 16 FLTKTFEMVGDPNTNHIVSWSRGGISFVVWDPHSFSATILPLYFKHNNFSSFVRQLNTYGFRKIEAER---------WEFMNEGFLMGQRDLLKSIN 103 9****************************************************************999.........******************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r++s+ Tp5g00190 104 RRASS 108 **986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 3.6E-50 | 12 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 2.5E-35 | 13 | 100 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.61E-32 | 13 | 105 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.1E-30 | 16 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.9E-19 | 16 | 39 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.9E-19 | 54 | 66 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 55 | 79 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.9E-19 | 67 | 79 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MERSSSSRAW SIPVPFLTKT FEMVGDPNTN HIVSWSRGGI SFVVWDPHSF SATILPLYFK 60 HNNFSSFVRQ LNTYGFRKIE AERWEFMNEG FLMGQRDLLK SINRRASSSS APPSLHHSQH 120 ADGHDPCVDE LRQERRVLMM EISRLRQQEQ TARCYIQAME QRINGAEKKQ THMMSFLRRA 180 VQNPTLLQQL LQQQRKEATL DQVKPEQVSE LEALALEMQG HGRQQIQDVE NELDDRFWTE 240 LLMNNDGNSK DGEEEANVNT S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 1e-23 | 16 | 110 | 20 | 125 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp5g00190 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ446784 | 1e-146 | DQ446784.1 Arabidopsis thaliana clone pENTR221-At3g63350 heat shock transcription factor family protein (At3g63350) mRNA, complete cds. | |||
GenBank | DQ653166 | 1e-146 | DQ653166.1 Arabidopsis thaliana clone 0000012913_0000009313 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024012904.1 | 1e-137 | heat stress transcription factor A-7b | ||||
Swissprot | Q9M1V5 | 1e-127 | HFA7B_ARATH; Heat stress transcription factor A-7b | ||||
TrEMBL | V4LV22 | 1e-140 | V4LV22_EUTSA; Uncharacterized protein | ||||
STRING | XP_006402285.1 | 1e-141 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14836 | 16 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G63350.1 | 1e-122 | HSF family protein |