PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G63350.1 | ||||||||
Common Name | AT-HSFA7B, F16M2.200, HSF10, HSFA7B | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | HSF | ||||||||
Protein Properties | Length: 282aa MW: 32623.6 Da PI: 4.869 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 109.9 | 1.8e-34 | 29 | 121 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k++e++ d+++++++sw++ g sfvv+d+++f+ ++Lp yFkh+nf+SFvRQLn+YgF+k++ e+ weF ++ F g+++ll++ik AT3G63350.1 29 FLTKTFEMVGDPNTNHIVSWNRGGISFVVWDPHSFSATILPLYFKHNNFSSFVRQLNTYGFRKIEAER---------WEFMNEGFLMGQRDLLKSIK 116 9****************************************************************999.........******************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r++s+ AT3G63350.1 117 RRTSS 121 **986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.6E-36 | 22 | 113 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.1E-52 | 25 | 118 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 3.61E-33 | 25 | 118 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 8.7E-31 | 29 | 118 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.8E-19 | 29 | 52 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.8E-19 | 67 | 79 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 68 | 92 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.8E-19 | 80 | 92 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MDPSSSSRAR SMPPPVPMEG LQEAGPSPFL TKTFEMVGDP NTNHIVSWNR GGISFVVWDP 60 HSFSATILPL YFKHNNFSSF VRQLNTYGFR KIEAERWEFM NEGFLMGQRD LLKSIKRRTS 120 SSSPPSLNYS QSQPEAHDPG VELPQLREER HVLMMEISTL RQEEQRARGY VQAMEQRING 180 AEKKQRHMMS FLRRAVENPS LLQQIFEQKR DREEAAMIDQ AGLIKMEEVE HLSELEALAL 240 EMQGYGRQRT DGVERELDDG FWEELLMNNE NSDEEEANVK QD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 7e-25 | 24 | 123 | 12 | 125 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 111 | 117 | LKSIKRR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18412735 | 0.0 | ||||
Genevisible | 251166_at | 0.0 | ||||
Expression Atlas | AT3G63350 | - | ||||
AtGenExpress | AT3G63350 | - | ||||
ATTED-II | AT3G63350 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | member of Heat Stress Transcription Factor (Hsf) family | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G63350.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G63350 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ446784 | 0.0 | DQ446784.1 Arabidopsis thaliana clone pENTR221-At3g63350 heat shock transcription factor family protein (At3g63350) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_191894.1 | 0.0 | winged-helix DNA-binding transcription factor family protein | ||||
Swissprot | Q9M1V5 | 0.0 | HFA7B_ARATH; Heat stress transcription factor A-7b | ||||
TrEMBL | A0A178VHJ6 | 0.0 | A0A178VHJ6_ARATH; HSFA7B | ||||
STRING | AT3G63350.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14836 | 16 | 19 | Representative plant | OGRP96 | 17 | 233 |
Link Out ? help Back to Top | |
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Phytozome | AT3G63350.1 |
Entrez Gene | 825510 |
iHOP | AT3G63350 |
wikigenes | AT3G63350 |