PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp5g00030 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | C3H | ||||||||
Protein Properties | Length: 251aa MW: 28850 Da PI: 7.7062 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.5 | 1.8e-06 | 3 | 26 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k+ lC+ f+ G C Gd+C F+H+ Tp5g00030 3 KRILCK-FFVHGACLKGDNCEFSHD 26 889***.7777*************5 PP | |||||||
2 | zf-CCCH | 26.5 | 1.1e-08 | 34 | 54 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C ++ r G+C+yG+rC++ H+ Tp5g00030 34 ICTYYKR-GICSYGSRCRYEHV 54 7998888.***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.981 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.8E-5 | 1 | 27 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.71E-8 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-4 | 3 | 28 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.577 | 29 | 56 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 31 | 53 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-4 | 31 | 55 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-6 | 34 | 54 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.6E-5 | 34 | 53 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 1.44E-13 | 88 | 163 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 4.2E-10 | 91 | 158 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 5.30E-4 | 98 | 158 | No hit | No description |
SMART | SM00184 | 5.5E-7 | 99 | 156 | IPR001841 | Zinc finger, RING-type |
Pfam | PF00097 | 2.2E-7 | 99 | 156 | IPR018957 | Zinc finger, C3HC4 RING-type |
PROSITE profile | PS50089 | 12.342 | 99 | 157 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 123 | 132 | IPR017907 | Zinc finger, RING-type, conserved site |
PROSITE profile | PS50103 | 13.103 | 186 | 215 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.54 | 186 | 214 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MSKRILCKFF VHGACLKGDN CEFSHDWKDP TSNICTYYKR GICSYGSRCR YEHVKASRPH 60 PSASSSSLSD PQEREEHKKV CEKKQKQVEA LKLSQEIECC VCLERVLSKP TPAERKFGLL 120 TECDHAFCIA CIRNWRSSSP STGMDVNSTL RACPICRKLS YFVVPSVIWF SAPEEKKEIM 180 ENYREKLRSI DCKHFNFGDG NCPFGTSCFY KHAFHDGRLE EVVLRHLDAE DGETVIAKDI 240 RLSDFLEDMH I |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp5g00030 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ903575 | 1e-130 | GQ903575.1 Arabidopsis thaliana ecotype Columbia chloroplast luminal 19 kDa protein (At3g63540) gene, complete cds; and CCCH-type zinc finger protein C3H69 (At3g63550) gene, complete cds, alternatively spliced; nuclear genes for chloroplast products. | |||
GenBank | GQ903576 | 1e-130 | GQ903576.1 Arabidopsis thaliana ecotype Wassilewskija chloroplast luminal 19 kDa protein (At3g63540) gene, complete cds; and CCCH-type zinc finger protein C3H69 (At3g63550) gene, complete cds, alternatively spliced; nuclear genes for chloroplast products. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023639091.1 | 1e-127 | putative RING-type E3 ubiquitin transferase C3H69 isoform X2 | ||||
Swissprot | E0X9N4 | 1e-125 | C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69 | ||||
TrEMBL | A0A1J3CUI6 | 1e-125 | A0A1J3CUI6_NOCCA; Zinc finger CCCH domain-containing protein 69 | ||||
TrEMBL | A0A398A0D4 | 1e-125 | A0A398A0D4_BRACM; Uncharacterized protein | ||||
STRING | scaffold_503646.1 | 1e-123 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2944 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 7e-93 | C3H family protein |
Publications ? help Back to Top | |||
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