PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp4g29230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 340aa MW: 38068 Da PI: 6.354 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105.5 | 2.7e-33 | 179 | 235 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 +Dgy+WrKYGqK vk+s+fprsYYrCt+a+C+vkk+vers +dp++v++tYeg+H+h Tp4g29230 179 EDGYRWRKYGQKAVKNSPFPRSYYRCTTASCNVKKRVERSFRDPSTVVTTYEGQHTH 235 8******************************************************** PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038130 | 1.8E-118 | 1 | 340 | IPR017396 | PWRKY transcription factor, group IIc |
Gene3D | G3DSA:2.20.25.80 | 8.0E-34 | 163 | 237 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-28 | 170 | 236 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.963 | 173 | 238 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-38 | 178 | 237 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.8E-26 | 179 | 235 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 340 aa Download sequence Send to blast |
MEFTDFSKTS FYQPSSQSVW DFGDFAAVER NSLGFMELLD SQLQDFATVS PHSFLLETLQ 60 PQTQQLAKLS SSDSTTILQA PPSNATADKS VTSKVESLCS DHLLINPPAT PNSSSISSAS 120 SEAVNEEKAK REDEEEEEEE QEHKKSNTNK QLKPKKNNQK RQREARVAFM TKSEVDHLED 180 GYRWRKYGQK AVKNSPFPRS YYRCTTASCN VKKRVERSFR DPSTVVTTYE GQHTHISPLT 240 SRPISGGGFF GSSGVSSNLG SFGFPIESST LISPQFQQLV HYHQQQQQQE LLSCFGGVGE 300 YVNSHANGYC DDDRVKKSRG LVKDNGLLQD VIPSHMLKEE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-28 | 168 | 238 | 7 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 6e-28 | 168 | 238 | 7 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00069 | PBM | Transfer from AT2G47260 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp4g29230 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020885622.1 | 0.0 | probable WRKY transcription factor 23 | ||||
Swissprot | O22900 | 1e-177 | WRK23_ARATH; WRKY transcription factor 23 | ||||
TrEMBL | V4L6S1 | 0.0 | V4L6S1_EUTSA; Uncharacterized protein | ||||
STRING | XP_006397921.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6152 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47260.1 | 1e-132 | WRKY DNA-binding protein 23 |
Publications ? help Back to Top | |||
---|---|---|---|
|