PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g28840
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 331aa    MW: 37977.1 Da    PI: 8.0169
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g28840genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.7e-12160210154
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                +r++h ++Er+RR+++N  ++ Lr+l+P++   +  + + a+i+  A++++k L
  Tp4g28840 160 QRMTHIAVERNRRRQMNVHLNSLRSLIPSS---YILRGDQASIVGGAIDFVKIL 210
                79****************************...9***************99866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-14151220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.08E-9158215No hitNo description
PROSITE profilePS5088814.138159210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-12160224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-9160210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-9165216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MFVLRSLDQK VIVRRSLEVQ GFAQDQSFVL EEDQFSNPIL QDTTIPFLQM LQQNEEPSSV  60
LSFKDPNFLA LLSLQTLDKP WELGNYLPHE VPEFHSPIHS ESNHYYQNPS LEGVNEAISS  120
QKLQRKRRNN NNNLPASVSR EKRKRRRTKP TKNIEEMETQ RMTHIAVERN RRRQMNVHLN  180
SLRSLIPSSY ILRGDQASIV GGAIDFVKIL EQHLQSLEAQ KITRETDSNN LKDISSNKLR  240
ATNEEQTSKL KIDATVIESH VNLKIECPRK QGQLLRSIIL LEKLRFTVLH LNITSPCNAS  300
VSYSFNLKME DDCNLGSADE ITAAVGQIFE C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125146KRRNNNNNLPASVSREKRKRRR
2141146KRKRRR
3142146RKRRR
4142147RKRRRT
5142149RKRRRTKP
6160171RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g28840
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6784349e-96AB678434.1 Arabidopsis thaliana mRNA for basic helix-loop-helix DNA-binding superfamily protein, complete cds.
GenBankAF4886029e-96AF488602.1 Arabidopsis thaliana clone bHLH070 putative bHLH transcription factor mRNA, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002880266.11e-172transcription factor bHLH70
SwissprotO810371e-171BH070_ARATH; Transcription factor bHLH70
TrEMBLD7LF901e-171D7LF90_ARALL; Uncharacterized protein
STRINGBostr.25993s0085.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.11e-166bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]