PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g28550
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 573aa    MW: 63718.5 Da    PI: 5.8567
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g28550genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.75e-14400446455
                HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                +h e+Er+RR+++N++f  Lr+++P+ +      K++Ka+ L  A+ YIk+Lq
  Tp4g28550 400 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLGDAISYIKELQ 446
                799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-5048239IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474594.58E-19395460IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.936396445IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.45E-15399450No hitNo description
Gene3DG3DSA:4.10.280.101.1E-18400460IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-11400446IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-18402451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MNMSDLGWDD EEKALVSAVI GNLASDFLRA NSNSNQNLFL VMGTDDNLNK KLSSLVDWQN  60
SENFSWNYAI FWQKTMSRSG HQVLGWGDGC CREPNVEEES KVVRVYNCNS LGLEEQRCQD  120
MRKTVLQKLH RLFGGSDEDN YALSLENVTP TEIFFLASMY FFFNHGEGGP GRCYASGKHV  180
WLSDAVNSVS DYCFRSFMAK SAGIRTIVMV PTDAGVLELG SVWSLPENVE LVKSVQALFM  240
RRAKLPLMVN STNTNMSGGG IHKLFGQELN NSEQGAHHGK KLDVRNLDQR FIPQIWQGYN  300
NNKDSTFGYT SQGIDVKVQE NENVVVDDNN YKMQIEFAGS SVAASSNPST NTQLEKSDSC  360
TEKRPASLLA GVAGTVSLVD EKRPRKRGRK PANGREEPLN HVEAERQRRE KLNQRFYALR  420
SVVPNISKMD KASLLGDAIS YIKELQEKVK IMEADRVRTE SSLAESNPMT TRTVESPEVD  480
IHAVNEEVVV RVISPLDSHP ASSIIQAMRN SEVSLTESKL SLAEDTMFHT FVIKSNNGSD  540
PLTKEKLIAA AYPQTSSTQQ PLPASSSQVS GDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-29394465273Transcription factor MYC2
5gnj_B8e-29394465273Transcription factor MYC2
5gnj_E8e-29394465273Transcription factor MYC2
5gnj_F8e-29394465273Transcription factor MYC2
5gnj_G8e-29394465273Transcription factor MYC2
5gnj_I8e-29394465273Transcription factor MYC2
5gnj_M8e-29394465273Transcription factor MYC2
5gnj_N8e-29394465273Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1381389KRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Regulates positively abscisic acid (ABA) response. Confers drought tolerance and sensitivity to ABA. {ECO:0000269|PubMed:17828375}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00101PBMTransfer from AT2G46510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g28550
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently by ABA and polyethylene glycol (PEG). {ECO:0000269|PubMed:17828375}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397843.10.0transcription factor ABA-INDUCIBLE bHLH-TYPE
SwissprotQ9ZPY80.0AIB_ARATH; Transcription factor ABA-INDUCIBLE bHLH-TYPE
TrEMBLV4N2990.0V4N299_EUTSA; Uncharacterized protein
STRINGXP_006397843.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37582759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.10.0ABA-inducible BHLH-type transcription factor
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Thatcher LF, et al.
    Characterization of a JAZ7 activation-tagged Arabidopsis mutant with increased susceptibility to the fungal pathogen Fusarium oxysporum.
    J. Exp. Bot., 2016. 67(8): p. 2367-86
    [PMID:26896849]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]