PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g28350
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 305aa    MW: 33976 Da    PI: 5.0314
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g28350genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-17101151256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                +y GVr+++ +g+++AeIrdps+   r+r++lg+f taeeAa  +++a+ +l+g+
  Tp4g28350 101 KYIGVRQRP-WGKYAAEIRDPST---RTRIWLGTFATAEEAAMGYDRAAIRLKGH 151
                89*******.**********976...5*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.6E-28101157IPR001471AP2/ERF domain
CDDcd000189.15E-31101157No hitNo description
SuperFamilySSF541716.02E-20101158IPR016177DNA-binding domain
PfamPF008472.4E-11101151IPR001471AP2/ERF domain
PROSITE profilePS5103220.771101158IPR001471AP2/ERF domain
SMARTSM003801.5E-33101164IPR001471AP2/ERF domain
PRINTSPR003675.0E-9102113IPR001471AP2/ERF domain
PRINTSPR003675.0E-9124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MKNRERKVKY TVHRKITSVT GKPFNGFPKV VKITVTDPCA TDSSSDEEND KLVAPATRVK  60
RFVEEIRFCD SEGASKREKP ARKATNKAAK NGVDGSVKPV KYIGVRQRPW GKYAAEIRDP  120
STRTRIWLGT FATAEEAAMG YDRAAIRLKG HNAQTNFLTP PRNLPVVPET PVIDLEAVSG  180
CDSARESQSS ICSPTSVLRF HRNEETEYGT EPVELSKVVD EETPASSSLS DPYFLPDLFP  240
AGDCFWDTEI APDPLFLDEI QSLPNNNTIS SKDPNLSESF PLSMIGDFSS CSWDVDEFFQ  300
DHLFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-20102157359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A8e-20102157662ATERF1
3gcc_A8e-20102157662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g28350
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397817.10.0ethylene-responsive transcription factor CRF5
SwissprotO823391e-134CRF5_ARATH; Ethylene-responsive transcription factor CRF5
TrEMBLV4KMY70.0V4KMY7_EUTSA; Uncharacterized protein
STRINGXP_006397817.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.11e-136cytokinin response factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Striberny B, et al.
    Cytokinin Response Factor 5 has transcriptional activity governed by its C-terminal domain.
    Plant Signal Behav, 2017. 12(2): p. e1276684
    [PMID:28045578]