PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g27720
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family TCP
Protein Properties Length: 362aa    MW: 38328.6 Da    PI: 10.3782
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g27720genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1196e-3777169295
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa 95 
                + k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl++a+pai+++tgt++ +a ++    +   +  + +++++   ++
  Tp4g27720  77 PLKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAEPAIIAATGTGTVPAIAMsV--NGTLKIPTTTNADSDVGEN 169
                57999***********************************************************8888844421..1111111111111111111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.7E-3082161IPR005333Transcription factor, TCP
PROSITE profilePS5136927.32783137IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MATIKKHQVA GKDERLRAVD LSIINGVRSL ETSKPFDLNP TASLEPKAEP SLEASSQHVP  60
SISMSLAPPS SSSMGPPLKR ASTKDRHTKV EGRGRRIRMP ATCAARIFQL TRELGHKSDG  120
ETIRWLLENA EPAIIAATGT GTVPAIAMSV NGTLKIPTTT NADSDVGENP AKKRRKRPSN  180
SEYIDINEAV SVSSGLAPIS TATIQPLQAP ASTVSQQTMP QGMIPMWAIP SNTVIPAVGA  240
FFLVPHVAGP SNQPQILAFP AANSSPSSYV SAVQQASSMA RPPPPPQVVP SNCVISVPDV  300
TGPKPSKTSS VMAPSSSSGI KNGGSSSTTT TTHMLRDFSL EIYEKQELHQ FMTTNTTRSS  360
KH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171175KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00316DAPTransfer from AT2G45680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g27720
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397747.10.0transcription factor TCP9
SwissprotO646471e-176TCP9_ARATH; Transcription factor TCP9
TrEMBLV4KMR60.0V4KMR6_EUTSA; Uncharacterized protein
STRINGXP_006397747.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98312434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-152TCP family protein