PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp4g26820

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

WRKY

Protein Properties

Length: 222aa MW: 24938.5 Da PI: 8.9695

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp4g26820	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.8	1.9e-32	148	205	1	58
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+ver +ed ++v++tYeg+Hnh Tp4g26820 148 LDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNH 205 59******************************************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.6E-34	133	205	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-28	140	205	IPR003657	WRKY domain
PROSITE profile	PS50811	29.585	143	205	IPR003657	WRKY domain
SMART	SM00774	1.3E-37	148	207	IPR003657	WRKY domain
Pfam	PF03106	3.3E-25	149	205	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MEGGGGGRRM VVNNYDLQQV TSSSTTIQEN MNFLVPFEET NVLTFFSSSS SSSFSSPSFP 60 IHNSSSTTNS THAPLGFSNN LQGGGPLGSK VVNDDQDNIR GGINNDAHSN SWWRSSSGSG 120 ELKNKVKIRR KLREPRFCFQ TKSDVDVLDD GYKWRKYGQK VVKNSLHPRS YYRCTHNNCR 180 VKKRVERLSE DCRMVITTYE GRHNHIPSDD STSPDHDCLS SF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-26	139	205	8	74	Probable WRKY transcription factor 4
2lex_A	2e-26	139	205	8	74	Probable WRKY transcription factor 4
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	132	KIRRKLR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00618	PBM	Transfer from AT2G44745	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp4g26820

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF404857	0.0	AF404857.1 Arabidopsis thaliana WRKY transcription factor 12 (WRKY12) mRNA, complete cds.
GenBank	AY088161	0.0	AY088161.1 Arabidopsis thaliana clone 42237 mRNA, complete sequence.
GenBank	BT028992	0.0	BT028992.1 Arabidopsis thaliana At2g44745 mRNA, complete cds.
GenBank	DQ446622	0.0	DQ446622.1 Arabidopsis thaliana clone pENTR221-At2g44745 WRKY family transcription factor (At2g44745) mRNA, complete cds.
GenBank	DQ653058	0.0	DQ653058.1 Arabidopsis thaliana clone 0000017096_0000011985 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002881979.1	1e-137	probable WRKY transcription factor 12
Swissprot	Q93WY4	1e-137	WRK12_ARATH; Probable WRKY transcription factor 12
TrEMBL	A0A178VP12	1e-136	A0A178VP12_ARATH; WRKY12
STRING	fgenesh2_kg.4__2664__AT2G44745.1	1e-137	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6045	25	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44745.1	1e-118	WRKY family protein

Publications ? help Back to Top
Yu Y, et al. MlWRKY12, a novel Miscanthus transcription factor, participates in pith secondary cell wall formation and promotes flowering. Plant Sci., 2013. 212: p. 1-9 [PMID:24094048] Yang L, et al. PtrWRKY19, a novel WRKY transcription factor, contributes to the regulation of pith secondary wall formation in Populus trichocarpa. Sci Rep, 2016. 6: p. 18643 [PMID:26819184] Li W,Wang H,Yu D Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions. Mol Plant, 2016. 9(11): p. 1492-1503 [PMID:27592586] Han Y, et al. WRKY12 represses GSH1 expression to negatively regulate cadmium tolerance in Arabidopsis. Plant Mol. Biol., 2019. 99(1-2): p. 149-159 [PMID:30617455]