PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp4g24170

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

C3H

Protein Properties

Length: 696aa MW: 75404.1 Da PI: 6.0986

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp4g24170	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.3e-07	306	326	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Tp4g24170 306 PCPDFRK-GACRRGDMCEYAHG 326 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48403	1.03E-16	39	182	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.4E-17	41	183	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.58E-14	47	181	No hit	No description
Pfam	PF12796	1.2E-10	84	157	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.0078	89	119	IPR002110	Ankyrin repeat
PROSITE profile	PS50297	16.335	89	192	IPR020683	Ankyrin repeat-containing domain
PRINTS	PR01415	3.6E-5	90	105	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	12.476	124	159	IPR002110	Ankyrin repeat
SMART	SM00248	0.0039	124	156	IPR002110	Ankyrin repeat
PRINTS	PR01415	3.6E-5	143	157	IPR002110	Ankyrin repeat
SMART	SM00356	4.0E-6	301	327	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.582	306	328	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.9E-4	306	328	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.1E-5	306	326	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	0.001	334	364	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	68	336	359	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.963	336	360	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 696 aa Download sequence Send to blast
MCCGSDRLNQ IVSSTSSSPI SFEDTNLLTN TEMNHLRVET EDTFASLLEL AANNDVEGVR 60 LSIDRDPSCV DEAGLWYGRQ KGSKAMVNDQ RTPLMVAATY GSIDVIKLIV SLTDANVNRA 120 CGNDQTTALH CAASGGAVNA IQVVKLLLAA GADLNLLDAE GQRAGDVIVV PPKLEGVKLM 180 LQELLSADGS STAERNLRVV TNLPSRSSTS PSHSPSGEND ESGLGSPLGS PFKLKSTEFK 240 KEYPVDPSLP DIKNSIYATD EFRMYSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKF 300 HYSCVPCPDF RKGACRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTGCAR RVCFFAHTPE 360 ELRPLYASTG SAVPSPRSNA DFAAALSLLP GSPSAVSAMS PLSPSAAGNG MPHSNMAWPQ 420 PNVPALHLPG SNLQSSRLRS SLNARDIPQD EFNMLADYEQ QQLLNEFSNS LSRSGRMKSL 480 PPSNLEDLFS AEGSSSPRFT DSALASAVFS PTHKSAVFNQ FQQQQHQQQS MLSPINTSFS 540 SPKSVDHSLF SGGGRMSPRN VVEPISPMSS RVSMLAHLSS RELRTNSSPI VGSPVNNNNS 600 WSSKWGSSNG KPDWGMSSEA LGKLRSSSSF DGDEPDVSWV QSLVKESPYE ANEKAATSSS 660 GENGKQPTAV DAVMDHAGLE AWIEQMQLDQ LVAQQN

Sequence ? help Back to Top

Protein Sequence Length: 696 aa Download sequence Send to blast

MCCGSDRLNQ IVSSTSSSPI SFEDTNLLTN TEMNHLRVET EDTFASLLEL AANNDVEGVR  60
LSIDRDPSCV DEAGLWYGRQ KGSKAMVNDQ RTPLMVAATY GSIDVIKLIV SLTDANVNRA  120
CGNDQTTALH CAASGGAVNA IQVVKLLLAA GADLNLLDAE GQRAGDVIVV PPKLEGVKLM  180
LQELLSADGS STAERNLRVV TNLPSRSSTS PSHSPSGEND ESGLGSPLGS PFKLKSTEFK  240
KEYPVDPSLP DIKNSIYATD EFRMYSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKF  300
HYSCVPCPDF RKGACRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTGCAR RVCFFAHTPE  360
ELRPLYASTG SAVPSPRSNA DFAAALSLLP GSPSAVSAMS PLSPSAAGNG MPHSNMAWPQ  420
PNVPALHLPG SNLQSSRLRS SLNARDIPQD EFNMLADYEQ QQLLNEFSNS LSRSGRMKSL  480
PPSNLEDLFS AEGSSSPRFT DSALASAVFS PTHKSAVFNQ FQQQQHQQQS MLSPINTSFS  540
SPKSVDHSLF SGGGRMSPRN VVEPISPMSS RVSMLAHLSS RELRTNSSPI VGSPVNNNNS  600
WSSKWGSSNG KPDWGMSSEA LGKLRSSSSF DGDEPDVSWV QSLVKESPYE ANEKAATSSS  660
GENGKQPTAV DAVMDHAGLE AWIEQMQLDQ LVAQQN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp4g24170

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352555	0.0	AK352555.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-01-D15.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006411461.1	0.0	zinc finger CCCH domain-containing protein 30
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	E4MVK8	0.0	E4MVK8_EUTHA; mRNA, clone: RTFL01-01-D15
TrEMBL	V4M994	0.0	V4M994_EUTSA; Uncharacterized protein
STRING	XP_006411461.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1785	28	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]