PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp4g23930 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | HSF | ||||||||
Protein Properties | Length: 241aa MW: 27982.2 Da PI: 5.8893 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 108.2 | 6.4e-34 | 38 | 129 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+y+++ed++++++isw+ +g+ fvv+++ efa+++Lp+ Fkh nf+SFvRQLn+YgF+kv++ + weF+++ F+kg++el+++i+ Tp4g23930 38 FLVKTYKVVEDPTTDDVISWNGDGTGFVVWQPAEFARDLLPTLFKHCNFSSFVRQLNTYGFRKVTTIR---------WEFSNEMFRKGHRELMCNIR 125 9*****************************************************************99.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+ks Tp4g23930 126 RRKS 129 **97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 7.0E-36 | 30 | 122 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 9.2E-55 | 34 | 127 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 4.63E-33 | 35 | 127 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 7.2E-18 | 38 | 61 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.4E-30 | 38 | 127 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.2E-18 | 76 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 77 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.2E-18 | 89 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MEDAAHHLHN DEERLPLEFM IGKQTSTVEL QPPLPPPFLV KTYKVVEDPT TDDVISWNGD 60 GTGFVVWQPA EFARDLLPTL FKHCNFSSFV RQLNTYGFRK VTTIRWEFSN EMFRKGHREL 120 MCNIRRRKSW SHSHSHSTSH QVVPTTTAKQ EDHQRLGIDH HHEDQRSSST SSSSVYSALL 180 DENKCLKNEN EFLSSELGKT KKKCKQLMEL MERYRGEDEA EETDDDDNDD EGLKLFGVKL 240 E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 8e-21 | 36 | 127 | 18 | 120 | Heat shock factor protein 1 |
5hdg_A | 7e-21 | 36 | 127 | 8 | 110 | Heat shock factor protein 1 |
5hdn_A | 7e-21 | 36 | 127 | 8 | 110 | Heat shock factor protein 1 |
5hdn_B | 7e-21 | 36 | 127 | 8 | 110 | Heat shock factor protein 1 |
5hdn_C | 7e-21 | 36 | 127 | 8 | 110 | Heat shock factor protein 1 |
5hdn_D | 7e-21 | 36 | 127 | 8 | 110 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00305 | DAP | Transfer from AT2G41690 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp4g23930 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_181700.1 | 1e-133 | heat shock transcription factor B3 | ||||
Swissprot | O22230 | 1e-134 | HSFB3_ARATH; Heat stress transcription factor B-3 | ||||
TrEMBL | A0A178VUP7 | 1e-133 | A0A178VUP7_ARATH; HSFB3 | ||||
STRING | AT2G41690.1 | 1e-133 | (Arabidopsis thaliana) | ||||
STRING | XP_006294789.1 | 1e-132 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10814 | 27 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41690.1 | 1e-123 | heat shock transcription factor B3 |