PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp4g23050

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

WRKY

Protein Properties

Length: 303aa MW: 33549.7 Da PI: 6.4203

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp4g23050	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	88.5	5.8e-28	166	226	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dD ++WrKYGqKe+ gs+fpr+YYrCt++ +Cp+kk+v+r ++dp ++ +tY+g+H+++ Tp4g23050 166 DDNHTWRKYGQKEILGSKFPRAYYRCTHQklyNCPAKKQVQRLNDDPFTFRVTYRGSHTCH 226 8**************************999*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.7E-26	162	226	IPR003657	WRKY domain
SuperFamily	SSF118290	2.88E-25	163	227	IPR003657	WRKY domain
SMART	SM00774	9.1E-37	165	227	IPR003657	WRKY domain
PROSITE profile	PS50811	20.243	166	228	IPR003657	WRKY domain
Pfam	PF03106	1.3E-25	166	226	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MEEVTSMIFH GLKLVKELES SLPEKSPEAL FTSLDEITKT FGDANERLKI VLEIKNSDTA 60 LNQLKPVIAS CSDQMLMQIK PDMMQEYWLR CAGSTSSQGT EAMAQTQRQL MAADGDGGRN 120 LTATERSGGS GSGSSTPRQR MRKNEGEEQT VLVAALRMGN TDLQPDDNHT WRKYGQKEIL 180 GSKFPRAYYR CTHQKLYNCP AKKQVQRLND DPFTFRVTYR GSHTCHIYST APTASTAAPT 240 APIAAATTIG HSVDYGPAFF DMADAMMFGS GGVGANMDFI FPFNDPPHDH HCYRRLEDGD 300 GEK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	6e-21	166	225	9	68	OsWRKY45
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00304	DAP	Transfer from AT2G40740	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp4g23050

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002879888.1	1e-174	WRKY transcription factor 55
Swissprot	Q9SHB5	1e-163	WRK55_ARATH; WRKY transcription factor 55
TrEMBL	D7LFT8	1e-173	D7LFT8_ARALL; WRKY DNA-binding protein 55
STRING	fgenesh1_pm.C_scaffold_4001817	1e-174	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3641	27	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40740.1	1e-137	WRKY DNA-binding protein 55

Publications ? help Back to Top
Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P An extracellular subtilase switch for immune priming in Arabidopsis. PLoS Pathog., 2013. 9(6): p. e1003445 [PMID:23818851] Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis. PLoS Pathog., 2016. 12(11): p. e1006003 [PMID:27806116]