PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g22680
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 358aa    MW: 39580.2 Da    PI: 4.52
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g22680genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.6e-1871121155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                + y+GVr++  +g+WvAeIr+p   g r  r +lg+f  a+eAa a+++a+k+++g
  Tp4g22680  71 CNYRGVRQRT-WGKWVAEIREP---G-RgSRLWLGTFPGAYEAALAYDEAAKAMYG 121
                56*****999.**********8...4.45************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.1E-1371121IPR001471AP2/ERF domain
CDDcd000182.58E-3171130No hitNo description
PROSITE profilePS5103220.87772129IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-1972130IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.8E-2972130IPR001471AP2/ERF domain
SMARTSM003809.3E-3672135IPR001471AP2/ERF domain
PRINTSPR003671.2E-87384IPR001471AP2/ERF domain
PRINTSPR003671.2E-895111IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MPSKIVERKR KSRDGATSVT EILKKWREYN EQTEPASCND DGGLKPIQKA HPKGSKKGCM  60
KGKGGPENGI CNYRGVRQRT WGKWVAEIRE PGRGSRLWLG TFPGAYEAAL AYDEAAKAMY  120
GQSARLNLPD ISNGSSSTAA TVSGSITTLS DESEVCALED MNLRSGLGQV KLEDGSDEHV  180
PLNTSVCIKD ELKVKYEMRV PLKSSQCVKE ELDVKEEVRE LNSADTFGIG LDPRKETLDE  240
WLIGNGNEQE PWDFGVDEVF DANELLGLLG EIDVSGQETM QGQVDRPSNV TYQMQFPDAN  300
LLGSLNHTEI AHPGVDFGYP IVQPSEMENN CLDLERCKFQ DLDIKDMGFE GQEKDVHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1772129260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g22680
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002881716.11e-169dehydration-responsive element-binding protein 2C isoform X1
SwissprotQ8LFR21e-163DRE2C_ARATH; Dehydration-responsive element-binding protein 2C
TrEMBLD7LF311e-168D7LF31_ARALL; Uncharacterized protein
STRINGBostr.23794s0027.1.p1e-174(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85322538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.11e-130ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]