PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp4g20670 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | ERF | ||||||||
Protein Properties | Length: 254aa MW: 29045.2 Da PI: 6.3233 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.7 | 3.9e-20 | 69 | 127 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpse.ng....krkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr++ +g+WvAeIr+p++ +g ++kr +lg+f+ta eAa a+++a+ +++g Tp4g20670 69 CRFRGVRQRV-WGKWVAEIREPVNhRGgnsnRSKRLWLGTFDTAAEAALAYDKAASAMYG 127 689*****99.**********999955677555**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.2E-14 | 69 | 127 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.10E-28 | 69 | 135 | No hit | No description |
SuperFamily | SSF54171 | 2.35E-19 | 70 | 136 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.221 | 70 | 135 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-31 | 70 | 141 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-28 | 70 | 136 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.8E-10 | 71 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.8E-10 | 101 | 117 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0034605 | Biological Process | cellular response to heat | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MQKEDNGSRQ SSSASVESSR RRRRPAEPVE ATLSRWEKEE GLEKVRRVQA KGSKKGCMRG 60 KGGPENPVCR FRGVRQRVWG KWVAEIREPV NHRGGNSNRS KRLWLGTFDT AAEAALAYDK 120 AASAMYGRYA RLNFPKELGD VSGGEMKKND EPECSRSYWL ETNNVSETSN GIIKRKDEKD 180 HLVYDYTIEL GQEETENLDP MTDNEIVKSM VYPAVKTEED YTFDRFELDN GLLYNESGYY 240 HGGGFDPYSE YFGF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-16 | 70 | 143 | 14 | 80 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid-inducible transcription. Involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:21069430}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00298 | DAP | Transfer from AT2G38340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp4g20670 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) treatment (PubMed:11798174). Induced by salt, heat and drought stresses. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009143395.1 | 1e-124 | PREDICTED: dehydration-responsive element-binding protein 2E | ||||
Swissprot | O80917 | 1e-104 | DRE2E_ARATH; Dehydration-responsive element-binding protein 2E | ||||
TrEMBL | A0A078JBN6 | 1e-124 | A0A078JBN6_BRANA; BnaC04g53380D protein | ||||
STRING | Bra005113.1-P | 1e-124 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14249 | 18 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38340.1 | 1e-92 | ERF family protein |
Publications ? help Back to Top | |||
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