PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g20590
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 230aa    MW: 25975.2 Da    PI: 10.6348
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g20590genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.3e-1378124354
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                ++h+ +ErrRR riNs f+ Lr++lP++      K +Ka +L ++v+Y ++L
  Tp4g20590  78 KKHSDAERRRRLRINSQFASLRTILPNL-----VKQDKAYVLGETVRYFNEL 124
                68*************************9.....7**************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-1266130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.36175124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.52E-778129No hitNo description
PfamPF000101.2E-1078124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-1279128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-1081130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MVLLQHFFSE SIFSLVLCFM QLEQRMQPLS RCYNPTTYSA TMGRNYFTGA TTSSKLFSRG  60
LSATKPKSKI ETKEVAAKKH SDAERRRRLR INSQFASLRT ILPNLVKQDK AYVLGETVRY  120
FNELKKIVKD IPTTPDLEDN LRLSHCNNRD MARLVFSCSD REGLMSEISE SMKAVKAKAV  180
RAEVMTIGGR TKCALFVQGV NGNEGLVRLK KSLKPVVNGK SSSEPKKQQQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g20590
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5775870.0AJ577587.1 Arabidopsis thaliana mRNA for putative bHLH131 transcription factor (bHLH131 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001320156.11e-125transcription factor bHLH131-like protein
SwissprotP0CB251e-126BH131_ARATH; Transcription factor bHLH131
TrEMBLD7M9K51e-125D7M9K5_ARALL; Predicted protein
STRINGAl_scaffold_0007_2331e-126(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139392025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.11e-110bHLH family protein