PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g17650
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 299aa    MW: 32727.2 Da    PI: 7.7037
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g17650genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH43.17e-14191216126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +kt++C+ +  tG+C++G++C+FaHg
  Tp4g17650 191 WKTRICNKWEITGYCPFGANCHFAHG 216
                8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.1E-1471107IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-672105IPR000571Zinc finger, CCCH-type
SMARTSM003569.1E-573100IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.05673101IPR000571Zinc finger, CCCH-type
SMARTSM003560.27130157IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-8130157IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-7130157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.685130158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-18184220IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.51E-10186221IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-9190217IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413190218IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-11191216IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MSHRRDSGSD AVHVIPTNDP PPENRFPNPG DNPVWATDDD YSRVSAVNTD DTESPSKKSR  60
GSPSSSSEIG KSLFKTKLCC KFREGNCPYD ASSCHFAHSV EELRRPPPDQ LETAAETRGE  120
FKIPAESGRS YKGRHCKKFY SVEGCPYGES CTFLHDEASR NRESFGISLG TRGYGAGDGG  180
NVAQIVRPPN WKTRICNKWE ITGYCPFGAN CHFAHGASEL HRFGGGLVEG EGKMGTSATP  240
DTKQTGQADT VISLVSPGVP LQRTSNAVTQ KPNGVRIQRK WKGPDKISRV YGDWIDDIE
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g17650
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410700.10.0zinc finger CCCH domain-containing protein 12
SwissprotQ9LQM31e-127C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A1J3GD840.0A0A1J3GD84_NOCCA; Zinc finger CCCH domain-containing protein 12
STRINGXP_006410700.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-111C3H family protein