PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g16230
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 534aa    MW: 58563 Da    PI: 6.5787
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g16230genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.88e-086989526
               --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
               lC+ffa+ G+C  G +C+F H+
  Tp4g16230 69 LCKFFAQ-GWCAKGTSCRFLHV 89
               8******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.9346491IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-76488IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-56989IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-56989IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MSDSDMDIDD DEVQVQVKHT IAGESGLLGK SIEAHDSQND SVLRFPAPGV TVQSFPSGNG  60
PEKKRPALLC KFFAQGWCAK GTSCRFLHVN ESMSRTSQQQ AENNMARSSG IQSVEERRPL  120
ENKEGGRFSL LGENGMPSLV NPLGGQRVFP FTNEMRFMPS LENIGRDSLQ KCGAVFNDNR  180
SVFVNSANAF ALRSSFVHEH GSSITSYRQT DMGSSGPAWT GSVFSSVPMN QYTSTLGNFE  240
NRNNINGSNS LPMVHVTSVS SGQYAEDDTT SNKKKVSSND WEPSEPFRAS FTIPPYILPS  300
SDALYDPFTD IEIAEDRSLN APSSSKGKHA QKKSCQQKDG DSASGPQARD CNSDDKNSSC  360
SQNQYQESVA RKNLEAHGVV EVATSVVDQN DAITPSKEIS SSAAAENRVV LKRSKPAGHE  420
SWHRSDGSSH QKVLKSDEID GEVRSDAGMK VMRQFRTAVV ETIKEMLKPL WREGRLTKDV  480
HNMVVKRAAE KIVSAAVQFH QVPTDTESVE QYLSMSAPKI VKLVEGYVEK YGKP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the FRIGIDA-mediated vernalization pathway, but not in the autonomous flowering pathway. Acts cooperatively with FRI (FRIGIDA) or FRL1 (FRIGIDA-LIKE 1) to promote FLC (FLOWERING LOCUS C) expression. Required for the stabilization of the FRI-C complex. {ECO:0000269|PubMed:16291783, ECO:0000269|PubMed:21282526}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g16230
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024016807.10.0protein FRIGIDA-ESSENTIAL 1
SwissprotQ84VG70.0FES1_ARATH; Protein FRIGIDA-ESSENTIAL 1
TrEMBLV4NYI50.0V4NYI5_EUTSA; Uncharacterized protein
STRINGXP_006410533.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134681521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.10.0C3H family protein
Publications ? help Back to Top
  1. Ding L,Kim SY,Michaels SD
    FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis.
    Plant Physiol., 2013. 163(1): p. 243-52
    [PMID:23899645]