PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g15290
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 458aa    MW: 50365 Da    PI: 7.2638
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g15290genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.73e-114469126
               --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
               ++++ C+ff+rtG+C yG++C+++H+
  Tp4g15290 44 PGERDCQFFLRTGQCGYGNSCRYNHP 69
               5789*********************9 PP
2zf-CCCH36.39.1e-1290114327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                ++ C +f++tG CkyG++Ck++H++
  Tp4g15290  90 QPDCEYFLKTGACKYGSTCKYHHPK 114
                789********************96 PP
3zf-CCCH32.61.4e-10135158326
                S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                ++ C+++++tG C++G  CkF+H+
  Tp4g15290 135 EKSCPYYMQTGMCRFGVACKFHHP 158
                667********************8 PP
4zf-CCCH39.96.8e-13275299327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                +++Crff+ tGtCkyGd Ck++H++
  Tp4g15290 275 RAECRFFMNTGTCKYGDDCKYSHPK 299
                799********************96 PP
5zf-CCCH34.63.3e-11319345127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                ++++ C +f ++G+CkyG++CkF H++
  Tp4g15290 319 PGQPACGNFKAYGFCKYGANCKFDHPM 345
                57899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.6E-64370IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.8124371IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-94569IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-54771IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-44968IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-687114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.89687115IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-990114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-692115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-493113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-6131160IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-5132159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.798132160IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-7134158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4137157IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-7269300IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.361272300IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-8273299IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-10275299IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-6278299IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-6315344IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.324318346IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-6318345IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8320345IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-4324343IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MSETQQVQNT TGSIRSSEKI EDTFKRMKVN EENMEQSSPY PDRPGERDCQ FFLRTGQCGY  60
GNSCRYNHPL THIPQGVFYH RDELPERIGQ PDCEYFLKTG ACKYGSTCKY HHPKDRNGAG  120
PVLFNVLGYP MRQGEKSCPY YMQTGMCRFG VACKFHHPHP QPHNGHSTTY GMSSFPSVGF  180
PYAGGLTMMS LPPATYGVMP PPATYGAMPR PQVPHPQAYM PFMVAPSQGL SPPQDWSTYM  240
AGSNPIYNVK TQPDSSSSAS VPVAVTSHHH SFSERAECRF FMNTGTCKYG DDCKYSHPKE  300
RMLQSSPNLL NHIVLPARPG QPACGNFKAY GFCKYGANCK FDHPMPLNPY HNTGLTVPSL  360
PTTYASPTHL GIPPPPSRGG STTLSNGNKT AAENHSSEIE KQDDGSDKSE VQDSSQLSGS  420
DSTALSNGKP DAENPSSETK KQDDNPSQPD NSEKQDCS
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g15290
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1387441e-175AF138744.1 Arabidopsis thaliana zinc finger protein 2 (zfn2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410430.20.0zinc finger CCCH domain-containing protein 26
SwissprotO487720.0C3H26_ARATH; Zinc finger CCCH domain-containing protein 26
TrEMBLM4CMV50.0M4CMV5_BRARP; Uncharacterized protein
STRINGBra005543.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32930.10.0zinc finger nuclease 2