PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g13720
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 241aa    MW: 27162.8 Da    PI: 4.9314
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g13720genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.6e-1788136354
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                y+GVr ++ +g+++AeIrd + ng   r++lg+f+ aeeAa a+++a+ + +
  Tp4g13720  88 YRGVRKRP-WGKFAAEIRDSTRNG--IRVWLGTFDKAEEAALAYDQAAFATK 136
                9*******.**********44465..*********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-1187134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-2987146IPR001471AP2/ERF domain
PROSITE profilePS5103221.87887145IPR001471AP2/ERF domain
SMARTSM003802.7E-3587151IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-2188147IPR016177DNA-binding domain
PRINTSPR003674.0E-108899IPR001471AP2/ERF domain
CDDcd000185.45E-2888146No hitNo description
PRINTSPR003674.0E-10111127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MEYSQSTMYS SPSSWSSSQE SFMWEESSAL DQSSDHHQYF FDPNHYYSDD FFSFESPEMM  60
IKEETQNGDV SYSEEEEKIG IVDEDRSYRG VRKRPWGKFA AEIRDSTRNG IRVWLGTFDK  120
AEEAALAYDQ AAFATKGSLA ILNFPVEVVR ESLKKMENVN LQDGGSPVMA LKRKHSLRNR  180
PRGKKRSSNS NSSSSSSSSS SSSSSTSRSN KQSIVKQESG TLVVFEDLGA EYLEQLLMSS  240
C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-2786148163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A5e-2780147774Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00286DAPTransfer from AT2G31230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g13720
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410255.11e-127ethylene-responsive transcription factor 15
SwissprotQ8VYM01e-122ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBLV4MGN11e-125V4MGN1_EUTSA; Uncharacterized protein
STRINGXP_006410255.11e-126(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39901859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.11e-104ethylene-responsive element binding factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang H, et al.
    Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea.
    Front Plant Sci, 2015. 6: p. 686
    [PMID:26388886]