PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g13710
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 482aa    MW: 54037.5 Da    PI: 5.7606
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g13710genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.62.9e-10277318854
                HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 Er RR +  ++f+ L+ l+P++     +K++ a+i+ +A++YIk+L
  Tp4g13710 277 TERERRVHFTDRFFDLKNLIPNP-----TKNDRASIVGEAIDYIKEL 318
                59*********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.8E-12260331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.433269318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-7275324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-7277318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-10277330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.84E-9278323No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MKRAEREIAK GDRRLVGESS VGPTFLRERE ERGSIYEEMG CFDPNTPAEV TVESGFSQDG  60
PPPPQILVAG STSNSNCSVD VEELSEFHLS PQDCPQASST PLQFHINPLP PPPCDQFQNN  120
ISLIHQMAHD QQHSNWDNSY QDFVNLGPNS ATTPDLLSLL HLPRCSLPPP HSMLPNSSIS  180
FSDIMSSSSA AAVMYDPLFH LNFPLQPRDQ SQQRNGSCLL GVEDHIQMDA NGGGVNMMYY  240
EEGNNNNNGG FDNGVLEFSN GGKRKGRGSG KSRTFPTERE RRVHFTDRFF DLKNLIPNPT  300
KNDRASIVGE AIDYIKELLR TIEEFKMLVE KKKFGKFRSM KKARTGGEED QEQEEDTVNC  360
RPQSEVHQSG FNKKNNNNSL RCSWLKRKSK VTEVDVRIID DEVTIKLVQK KKINCLLFTT  420
KVLDQLQLDL HHVAGGQIGE HYSFLFNTKI SEGSCVYASG IADTVMEVVE KQYMEAVPTN  480
GY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00285DAPTransfer from AT2G31220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g13710
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024003913.10.0transcription factor bHLH10
SwissprotQ84TK10.0BH010_ARATH; Transcription factor bHLH10
TrEMBLV4M9D80.0V4M9D8_EUTSA; Uncharacterized protein
STRINGXP_006410254.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31220.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]