PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp4g10110

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

NAC

Protein Properties

Length: 344aa MW: 39217.2 Da PI: 6.1827

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp4g10110	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	154.2	5.7e-48	14	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 l pGfrF+Ptd el+++yL++k++g+++++ vi+ev+iyk+ePwdLp ++ ++e+ew++F+ r +ky++g++++rat gyWkatgk+++v+s +++ Tp4g10110 14 LFPGFRFSPTDVELISYYLRRKINGDENSV-AVIAEVEIYKFEPWDLPgESKLKSENEWFYFCARGRKYPHGSQSRRATLLGYWKATGKERSVKS-GNQI 111 579**********************999.89***********543334678***********************************.999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+k+tLvf+ grap+ge+t+W+mhey + Tp4g10110 112 VGTKRTLVFHIGRAPRGERTEWIMHEYCI 140 ***************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.53E-54	6	155	IPR003441	NAC domain
PROSITE profile	PS51005	52.257	14	156	IPR003441	NAC domain
Pfam	PF02365	6.9E-24	16	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009845	Biological Process	seed germination
GO:0009938	Biological Process	negative regulation of gibberellic acid mediated signaling pathway
GO:0033619	Biological Process	membrane protein proteolysis
GO:0048573	Biological Process	photoperiodism, flowering
GO:0071472	Biological Process	cellular response to salt stress
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MSKEAEMSIA MSALFPGFRF SPTDVELISY YLRRKINGDE NSVAVIAEVE IYKFEPWDLP 60 GESKLKSENE WFYFCARGRK YPHGSQSRRA TLLGYWKATG KERSVKSGNQ IVGTKRTLVF 120 HIGRAPRGER TEWIMHEYCI HGAAQDALVV CRLRKNADFR ASSSQRQMED GLVQDDDYVA 180 QTGGSDREKK SYSIYEPELQ IPNGDIVESS NVVEDPADTD DDCYAEILND DIINLDKEAL 240 KANQAFRPNY PTQQETIFSE ASSSKQRSEC GIKKEPKQTM NCYALFRIKN VVDTTGSFGW 300 RIQNPFQIKK DNIQRLIKNV LATTVFLTIL MSVFFTVLTA TDRD

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MSKEAEMSIA MSALFPGFRF SPTDVELISY YLRRKINGDE NSVAVIAEVE IYKFEPWDLP  60
GESKLKSENE WFYFCARGRK YPHGSQSRRA TLLGYWKATG KERSVKSGNQ IVGTKRTLVF  120
HIGRAPRGER TEWIMHEYCI HGAAQDALVV CRLRKNADFR ASSSQRQMED GLVQDDDYVA  180
QTGGSDREKK SYSIYEPELQ IPNGDIVESS NVVEDPADTD DDCYAEILND DIINLDKEAL  240
KANQAFRPNY PTQQETIFSE ASSSKQRSEC GIKKEPKQTM NCYALFRIKN VVDTTGSFGW  300
RIQNPFQIKK DNIQRLIKNV LATTVFLTIL MSVFFTVLTA TDRD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-42	13	166	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-42	13	166	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-42	13	166	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-42	13	166	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-42	13	166	19	174	NAC domain-containing protein 19
3swm_B	4e-42	13	166	19	174	NAC domain-containing protein 19
3swm_C	4e-42	13	166	19	174	NAC domain-containing protein 19
3swm_D	4e-42	13	166	19	174	NAC domain-containing protein 19
3swp_A	4e-42	13	166	19	174	NAC domain-containing protein 19
3swp_B	4e-42	13	166	19	174	NAC domain-containing protein 19
3swp_C	4e-42	13	166	19	174	NAC domain-containing protein 19
3swp_D	4e-42	13	166	19	174	NAC domain-containing protein 19
3ulx_A	3e-42	4	153	10	165	Stress-induced transcription factor NAC1
4dul_A	4e-42	13	166	16	171	NAC domain-containing protein 19
4dul_B	4e-42	13	166	16	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269\|PubMed:17410378, ECO:0000269\|PubMed:18363782, ECO:0000269\|PubMed:19704528, ECO:0000269\|PubMed:19704545}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00280	DAP	Transfer from AT2G27300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp4g10110

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269\|PubMed:17158162, ECO:0000269\|PubMed:17410378, ECO:0000269\|PubMed:18363782, ECO:0000269\|PubMed:19704528, ECO:0000269\|PubMed:19704545}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013651730.1	0.0	NAC domain-containing protein 40-like isoform X2
Swissprot	Q9XIN7	0.0	NAC40_ARATH; NAC domain-containing protein 40
TrEMBL	A0A397YKI5	0.0	A0A397YKI5_BRACM; Uncharacterized protein
STRING	Bra012024.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10453	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27300.1	0.0	NTM1-like 8

Publications ? help Back to Top
Liang M, et al. Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana. Traffic, 2015. 16(10): p. 1062-74 [PMID:26201836] Tian H, et al. NTL8 Regulates Trichome Formation in Arabidopsis by Directly Activating R3 MYB Genes TRY and TCL1. Plant Physiol., 2017. 174(4): p. 2363-2375 [PMID:28649093]