PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g10020
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family TALE
Protein Properties Length: 453aa    MW: 51211.7 Da    PI: 7.9193
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g10020genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.82.5e-102693061954
                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                F+   ++yp   ++e+LAk++gLt++qV++WF N R +
  Tp4g10020 269 FNHflHPYPRDLDKERLAKQTGLTKSQVSNWFINARVR 306
                5544589*****************************87 PP
2BELL116.81e-37144214272
       BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                rqelq+kkakL+s++e+V++rYkqy++q+qt+issFe++aglgsa++Yt++Al++iS++Fr++kd+i+ qi
  Tp4g10020 144 RQELQMKKAKLISMVEKVEQRYKQYHDQMQTIISSFEQAAGLGSANSYTQMALQTISKQFRAVKDMICLQI 214
                79******************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.5E-4975212IPR006563POX domain
PfamPF075261.5E-3788210IPR006563POX domain
PROSITE profilePS5007112.276247310IPR001356Homeobox domain
CDDcd000863.99E-12250311No hitNo description
SMARTSM003891.1E-9250314IPR001356Homeobox domain
SuperFamilySSF466892.69E-17251317IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-27253316IPR009057Homeodomain-like
PfamPF059206.9E-18267306IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MAVFFNGETE MREPSSDPFT MILNRFPDPT TTLNAHNHHF YNLCFGSQQH PLRMSKDEVV  60
DHTEQGNSSI STVSNGGVTQ SLMVLAPTYL KVAQELLNEI VNVGKSSRGA KQEQQMNQES  120
AIYGSYNGVG DIKGRYKPYV ASCRQELQMK KAKLISMVEK VEQRYKQYHD QMQTIISSFE  180
QAAGLGSANS YTQMALQTIS KQFRAVKDMI CLQIKHINKL LGEEESEGVS LTEKQLKKLG  240
KMPHNHSNAW RPQRGLPETA VSILRAWLFN HFLHPYPRDL DKERLAKQTG LTKSQVSNWF  300
INARVRVWKP MVEEMYLEEV NIEENRKGGN FNEHSDKCSS SKQLYNNTIS DESSNSFLPV  360
FHRGFIENEI SMQNSSSSCS VVTFGKQNEN RANLIHFNGG FGNYNTMVGN GVSLSLGLPH  420
SCDQTLNNIQ FESTSNGTKI SSIYPSLTYQ IMD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A4e-17256314563Homeobox protein Meis2
3k2a_B4e-17256314563Homeobox protein Meis2
4xrm_A4e-17256314563Homeobox protein Meis2
4xrm_B4e-17256314563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g10020
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935656e-73AB493565.1 Arabidopsis thaliana At2g27220 mRNA for hypothetical protein, partial cds, clone: RAAt2g27220.
GenBankDQ0565436e-73DQ056543.1 Arabidopsis thaliana homeodomain-containing protein (At2g27220) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013747083.10.0BEL1-like homeodomain protein 5
SwissprotQ8S8970.0BLH5_ARATH; BEL1-like homeodomain protein 5
TrEMBLA0A078GYM00.0A0A078GYM0_BRANA; BnaA04g15670D protein
TrEMBLA0A3P6CTZ70.0A0A3P6CTZ7_BRACM; Uncharacterized protein
STRINGBra034335.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM147491418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27220.10.0BEL1-like homeodomain 5