PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT2G27220.1 | ||||||||
Common Name | BLH5, T22O13.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | TALE | ||||||||
Protein Properties | Length: 431aa MW: 48817.7 Da PI: 7.5409 | ||||||||
Description | BEL1-like homeodomain 5 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.6 | 2.4e-09 | 248 | 286 | 19 | 55 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRake 55 Fe ++yp ++ LAk++gLt++qV++WF N R ++ AT2G27220.1 248 FEHflHPYPRDLDKVMLAKQTGLTKSQVSNWFINARVRM 286 5544589*****************************986 PP | |||||||
2 | BELL | 114.8 | 4.3e-37 | 130 | 199 | 3 | 72 |
BELL 3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 ++lq+kkakL+s+ e+V++rYkqy++q+qt+issFe++aglgsa++Yt++Al++iS++Fr++kd+i+ qi AT2G27220.1 130 AALQMKKAKLISMGEMVEQRYKQYHDQMQTIISSFEQAAGLGSANSYTHMALQTISKQFRAVKDMISLQI 199 689****************************************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 6.0E-67 | 71 | 197 | IPR006563 | POX domain |
Pfam | PF07526 | 9.6E-33 | 82 | 196 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.115 | 226 | 289 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.44E-11 | 229 | 289 | No hit | No description |
SMART | SM00389 | 1.2E-8 | 229 | 293 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.2E-16 | 230 | 296 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-26 | 232 | 293 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.9E-17 | 246 | 285 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 264 | 287 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009046 | anatomy | flower | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MAAFFLGESE MREHSSDLFM MTLNPFREQT TTTNAHDDHF YNLCFGSQQY RPRDEVGHIE 60 QGNSSISTFS NGGVFRALAP IYLKAAQELL NEIVNVGNGS HGAKQERPVS KESTIYGVED 120 INGGYKPGVA ALQMKKAKLI SMGEMVEQRY KQYHDQMQTI ISSFEQAAGL GSANSYTHMA 180 LQTISKQFRA VKDMISLQIK QINKLLGQKE FDEQLKKLGK MAHHHSNAWR PQRGLPEKAV 240 SVLRSWLFEH FLHPYPRDLD KVMLAKQTGL TKSQVSNWFI NARVRMWKPL VEELYSEEMD 300 IEESRKGSDR YSTKGSSSKQ PYNNTTSNES SNTILPAFRQ GFTETETPRQ NSSSSCSVVM 360 RFTKQHMNQA NFINFNGGFE NYHTMDGNSV SLSLGLPHSC DQTFNNIHFE STSHGTENSA 420 IYSSSTYQIM D |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 3e-15 | 235 | 293 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 3e-15 | 235 | 293 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 263081_at | 0.0 | ||||
Expression Atlas | AT2G27220 | - | ||||
AtGenExpress | AT2G27220 | - | ||||
ATTED-II | AT2G27220 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT2G27220.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT4G32040, AT5G25220, AT1G23380, AT1G62990, AT1G70510 | |||||
IntAct | Search Q8S897 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT2G27220 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ056543 | 0.0 | DQ056543.1 Arabidopsis thaliana homeodomain-containing protein (At2g27220) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001318297.1 | 0.0 | BEL1-like homeodomain 5 | ||||
Refseq | NP_180290.2 | 0.0 | BEL1-like homeodomain 5 | ||||
Swissprot | Q8S897 | 0.0 | BLH5_ARATH; BEL1-like homeodomain protein 5 | ||||
TrEMBL | A0A178VX84 | 0.0 | A0A178VX84_ARATH; BLH5 | ||||
STRING | AT2G27220.2 | 0.0 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT2G27220.1 |
Entrez Gene | 817264 |
iHOP | AT2G27220 |
wikigenes | AT2G27220 |
Publications ? help Back to Top | |||
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