PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g05800
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 322aa    MW: 36231.4 Da    PI: 7.2255
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g05800genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.55.5e-09129149526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 C+ f++ G C++Gd+C FaHg
  Tp4g05800 129 ACPEFRK-GSCRRGDSCEFAHG 149
                7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.31576113IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-6124150IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.507125151IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-5129151IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-7129149IPR000571Zinc finger, CCCH-type
SMARTSM0035626159182IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.099159183IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061157Biological ProcessmRNA destabilization
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003727Molecular Functionsingle-stranded RNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MMIGENNRPH PTIHIPQWDQ INDPTATISS PFSSVNFNDY PNSPSPFLDS FASLYRYLPS  60
NEFANDSDSS SGDESLSDSF TCDEFRMYDF KVRRCSRGRS HDWTECPFAH PGEKARRRDP  120
RKFHYSGTAC PEFRKGSCRR GDSCEFAHGV FECWLHPARY RTQPCKDGTS CRRRICFFAH  180
TSDQLRVLAN SGETDLGLIS SIRSRFESHL SKSVTATSPT SILISPPFSP PSESPPLSPN  240
TGELIASMRK MQLNGGLWSA PVRSGLGLPF LHSNQGRTWP GLREFEIWDG ACEEIPAMEL  300
VESGKELRAN MYARLSRENS LG
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g05800
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0053951e-150AC005395.3 Arabidopsis thaliana chromosome 2 clone F17H15 map B68, complete sequence.
GenBankAF3705901e-150AF370590.1 Arabidopsis thaliana putative CCCH-type zinc finger protein (At2g25900; F17H15.7) mRNA, complete cds.
GenBankAF3754031e-150AF375403.1 Arabidopsis thaliana At2g25900/F17H15.7 mRNA, complete cds.
GenBankAK1172721e-150AK117272.1 Arabidopsis thaliana At2g25900 mRNA for putative Cys3His zinc finger protein ATCTH (ATCTH), complete cds, clone: RAFL16-82-I02.
GenBankAY1294681e-150AY129468.1 Arabidopsis thaliana At2g25900/F17H15.7 mRNA, complete cds.
GenBankCP0026851e-150CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408830.10.0zinc finger CCCH domain-containing protein 23
SwissprotO823071e-159C3H23_ARATH; Zinc finger CCCH domain-containing protein 23
TrEMBLA0A1J3FL650.0A0A1J3FL65_NOCCA; Zinc finger CCCH domain-containing protein 23 (Fragment)
STRINGXP_006408830.11e-180(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25900.21e-152C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]