PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g04910
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bZIP
Protein Properties Length: 134aa    MW: 15542.3 Da    PI: 10.271
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g04910genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.11.2e-1563122160
                XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                e+e++r +r+ +NR++A+  R+RKka++ eLe++vk Le++N++L ++l++l+ke   l+
  Tp4g04910  63 ERERRRLKRLLRNRVSAQQARERKKAYVSELEKRVKGLETKNTELDERLSTLQKENHMLR 122
                799***************************************************998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR000417.3E-66278IPR001630cAMP response element binding (CREB) protein
SMARTSM003386.7E-1363127IPR004827Basic-leucine zipper domain
PfamPF001708.2E-1663124IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.40365128IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.52E-1367125No hitNo description
Gene3DG3DSA:1.20.5.1701.2E-1767125No hitNo description
PROSITE patternPS0003607085IPR004827Basic-leucine zipper domain
CDDcd147044.36E-1277119No hitNo description
PRINTSPR000417.3E-680100IPR001630cAMP response element binding (CREB) protein
PRINTSPR000417.3E-6100117IPR001630cAMP response element binding (CREB) protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MSQMGFSNSL SQENFRENPQ DSDNEIGETH NLYDDAGEQS LARSEDVKLS GKVQRIKGKD  60
PAERERRRLK RLLRNRVSAQ QARERKKAYV SELEKRVKGL ETKNTELDER LSTLQKENHM  120
LRHIIKNTTS TSNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2oqq_A6e-1488127342Transcription factor HY5
2oqq_B6e-1488127342Transcription factor HY5
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16471ERRRLKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269|PubMed:15178762}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g04910
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018439034.13e-48PREDICTED: transcription factor HY5-like
SwissprotQ9SM502e-35HY5_SOLLC; Transcription factor HY5
TrEMBLA0A1J3IVF69e-39A0A1J3IVF6_NOCCA; Transcription factor HY5
STRINGXP_010525968.14e-44(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56912749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.13e-28bZIP family protein
Publications ? help Back to Top
  1. Wang F, et al.
    Light Signaling-Dependent Regulation of Photoinhibition and Photoprotection in Tomato.
    Plant Physiol., 2018. 176(2): p. 1311-1326
    [PMID:29146776]
  2. Liu CC, et al.
    The bZip transcription factor HY5 mediates CRY1a-induced anthocyanin biosynthesis in tomato.
    Plant Cell Environ., 2018. 41(8): p. 1762-1775
    [PMID:29566255]