PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g03720
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family B3
Protein Properties Length: 362aa    MW: 41382.8 Da    PI: 9.8146
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g03720genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.85.8e-1112673698
               EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
               l+    s   W+vk+  + ++ r  lt+GWkeF+ a++L++gD+v+F+ ++ + f  +v++f 
  Tp4g03720 12 LRSDYASEIIWKVKI--EDGR-R--LTDGWKEFALAHNLRVGDIVIFRQEKAMAF--HVTLFG 67
               444446778899999..4444.3..9**********************6555766..888875 PP
2B376.33.3e-24107194390
                EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
         B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                 + +++++l+++rl lp+ f+++hg++++++  ++l++e+g sW+++++ +++ g++++t+GW++F++angL++g f++Fkl++r +++
  Tp4g03720 107 VANVTPSTLRHDRLNLPRCFVRAHGLDERCG-AIVLMNEKGTSWTLNMSGKRSCGAMYITRGWRSFCHANGLRAGCFFTFKLIQRgKTR 194
                567899*********************9998.****************99999999***************************984443 PP
3B365.86.3e-21263358198
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                f++v++++++ +++ lvlp  fa+ +g+kk++  ++tl d++g +W+ +l ++k ++r+ l +GWkeF+ ang+k g++++++l+++ ++  v+k+++
  Tp4g03720 263 FVTVTLTPYNIRLSKLVLPIGFAKVNGLKKAK--KMTLLDKHGVKWSTNLWFEKERKRMRLVGGWKEFCIANGVKIGESIMLELIWEADRCSVLKFCS 358
                789999**********************9765..8***************88*********************************9877666777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.956169IPR003340B3 DNA binding domain
SMARTSM010190.031569IPR003340B3 DNA binding domain
SuperFamilySSF1019365.3E-132075IPR015300DNA-binding pseudobarrel domain
CDDcd100171.09E-82266No hitNo description
Gene3DG3DSA:2.40.330.105.0E-182282IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.1E-23102196IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-21104204IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.635105202IPR003340B3 DNA binding domain
CDDcd100171.08E-21105191No hitNo description
SMARTSM010195.7E-29106202IPR003340B3 DNA binding domain
PfamPF023625.7E-22106193IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.4E-23256359IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-22260359IPR015300DNA-binding pseudobarrel domain
CDDcd100172.78E-20262357No hitNo description
SMARTSM010192.6E-25263360IPR003340B3 DNA binding domain
PROSITE profilePS5086314.043263359IPR003340B3 DNA binding domain
PfamPF023621.3E-20263359IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MRRKHEQNTA ELRSDYASEI IWKVKIEDGR RLTDGWKEFA LAHNLRVGDI VIFRQEKAMA  60
FHVTLFGPSC CEIRYVSCLD DKTKLGKIQR KNPRKETMSL LESSCFVANV TPSTLRHDRL  120
NLPRCFVRAH GLDERCGAIV LMNEKGTSWT LNMSGKRSCG AMYITRGWRS FCHANGLRAG  180
CFFTFKLIQR GKTRILRLLP KESEEEEEDC SSDANEIESL STESDSDEAS NKDERSSQEC  240
SKREDKKGKS TWKASSAASA NRFVTVTLTP YNIRLSKLVL PIGFAKVNGL KKAKKMTLLD  300
KHGVKWSTNL WFEKERKRMR LVGGWKEFCI ANGVKIGESI MLELIWEADR CSVLKFCSKM  360
NP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241248KREDKKGK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g03720
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294430.21e-161B3 domain-containing protein REM14
SwissprotQ8GYM41e-95REM14_ARATH; B3 domain-containing protein REM14
TrEMBLA0A1J3J1311e-173A0A1J3J131_NOCCA; Putative B3 domain-containing protein REM15
STRINGBostr.8705s0004.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.14e-87B3 family protein