PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g03670
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family B3
Protein Properties Length: 601aa    MW: 67885.2 Da    PI: 9.3075
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g03670genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.72e-2279168697
                ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                +++++l+++ l+lpk+fa+++g+k  + ++++l+de  rsW + l+++k+s+++++t+GW++F+++n+ k+g f+ Fkl++ ++++++++v+
  Tp4g03670  79 VTASNLQEDSLYLPKDFASSNGLKR-KCREIVLTDEGERSWALDLKFNKSSDTFYITRGWRNFCDENRKKAGSFIKFKLTK-NGETPLLSVY 168
                5788899999***********9986.557*************************************************988.5666777765 PP
2B351.22.2e-16198291198
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                f++ ++++d+lks+rl+lp +f++e+g +k++  ++tl  ++g +   +l  r +sgr+ l+kG k+F+kangLk g++++++l++ +++++++++++
  Tp4g03670 198 FVTLTLTNDSLKSSRLYLPLPFLKENGVDKPG--MVTLLGKDGTRRLANL-LRESSGRMSLGKGLKDFAKANGLKLGESFTLELIW-ENATPMLSLLS 291
                7788899*******************999666..8********9999999.69999******************************.78889988876 PP
3B362.66.6e-20300393198
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                f++ ++++d++k++rl lp +f++e+g+++++  t+ l  ++g +W  +l  r ++gr+ l+kGWk+F++angL+ g++++++ ++ +++++++++ +
  Tp4g03670 300 FVTLTLTHDSFKNSRLGLPLPFMRENGMNEPG--TIALLGKDGTKWVANL-LRESQGRMSLGKGWKDFARANGLEIGESFTLESIW-KDATPMLSLSS 393
                7788899********************99665..8***************.6888888*************************999.88888888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.9E-2268165IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-2270168IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.29874171IPR003340B3 DNA binding domain
CDDcd100174.72E-2274169No hitNo description
SMARTSM010193.6E-3075171IPR003340B3 DNA binding domain
PfamPF023623.7E-2079167IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.3E-16193286IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-17194289IPR015300DNA-binding pseudobarrel domain
CDDcd100174.76E-15197291No hitNo description
SMARTSM010194.5E-26198293IPR003340B3 DNA binding domain
PROSITE profilePS5086311.871198293IPR003340B3 DNA binding domain
PfamPF023626.7E-16198292IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-19292396IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-21296394IPR015300DNA-binding pseudobarrel domain
CDDcd100177.93E-18300391No hitNo description
PROSITE profilePS5086315.115300395IPR003340B3 DNA binding domain
SMARTSM010198.2E-30300395IPR003340B3 DNA binding domain
PfamPF023622.0E-19300392IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MVFHVSGLGS SCCDMPDIPS NKNQTKIDYI SRTKHLRTEE GDDDQENKVV EREKKMRKNI  60
SEAEADLSSS DCSCFVAPVT ASNLQEDSLY LPKDFASSNG LKRKCREIVL TDEGERSWAL  120
DLKFNKSSDT FYITRGWRNF CDENRKKAGS FIKFKLTKNG ETPLLSVYPT EFIDDGTQGD  180
EDNSQRCRGP TSPNQNRFVT LTLTNDSLKS SRLYLPLPFL KENGVDKPGM VTLLGKDGTR  240
RLANLLRESS GRMSLGKGLK DFAKANGLKL GESFTLELIW ENATPMLSLL SAEFRSQNRF  300
VTLTLTHDSF KNSRLGLPLP FMRENGMNEP GTIALLGKDG TKWVANLLRE SQGRMSLGKG  360
WKDFARANGL EIGESFTLES IWKDATPMLS LSSTESKKCN EPRDSKATAP RRNVAWPFST  420
IIFPSWRKGI HMPSIKEIAV KRFTRMAWPD ARRFLEEARS VGCCCEGDDE RRSVKSLRKR  480
LSLMTKFFLE QLMKSLWKLS ARGEESTKNL RWRSFSRKNG TLTKAIKTRL RMEQGRMEAL  540
GNGVSSQNMA EEFDSNCERE CLSCFYDLHF SASGCNNCSP GEYACMKQAG NRSVHLSSLH  600
H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ykn_A3e-17496589421513Probable lysine-specific demethylase JMJ14
5yko_A3e-17496589421513Probable lysine-specific demethylase JMJ14
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g03670
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405015.20.0B3 domain-containing protein REM12
SwissprotP0CAP41e-122REM12_ARATH; B3 domain-containing protein REM12
TrEMBLA0A1J3CA800.0A0A1J3CA80_NOCCA; B3 domain-containing protein REM12
TrEMBLA0A1J3JLQ30.0A0A1J3JLQ3_NOCCA; B3 domain-containing protein REM12
STRINGBra000545.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78281641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.11e-125B3 family protein