PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT2G24680.1 | ||||||||
Common Name | F25P17.2, REM12 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 446aa MW: 50208 Da PI: 10.1174 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.9 | 2.2e-19 | 57 | 153 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f +l+++++l+++ l+lp + +++ g++ ++ ++++++de+ rsW + l+++k+s+++++++GW++F+++ng k g ++vFkl+g +++++v+++++ AT2G24680.1 57 FVALVTASNLRKDALYLPQDLTSSVGLE-RKYREIVVTDERErRSWALDLRFNKSSDTFYISRGWRSFCDENGKKPGGVFVFKLVG-NRETPVLSFCS 152 567999****************999887.57789*****5555******************************************9.66669999998 PP S CS B3 99 k 99 + AT2G24680.1 153 T 153 6 PP | |||||||
2 | B3 | 55.5 | 1e-17 | 193 | 286 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 f + ++++d+l ++r +lp +f++++g++k++ ++ l ++gr+We +l r sgr+vlt kGWkeF+ angLk+g+ ++++ + ++++++++++ AT2G24680.1 193 FMTLTLTHDNLIKSRRYLPLSFTRDNGLDKPG--MIFLLGKTGRKWEANL-LREASGRIVLTgKGWKEFAMANGLKSGELFTLEAIL-EKGTPMLSLV 286 6677789999999****************766..8***************.6777777555559********************776.7777887766 PP | |||||||
3 | B3 | 59.7 | 5.1e-19 | 345 | 435 | 4 | 99 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +ltp+dv + + l+lp +f++++g++k + + tl ++ ++W +l ksg + l++GWk+F++ang+k+g+++ +++++++++++v+k++++ AT2G24680.1 345 TLTPEDV-RACTLILPSQFMKANGINKLG--KKTLLGQNRKKWFAYL--LSKSGFVALGSGWKGFCEANGVKTGESFNLEYIDEQDTTPVFKFCSN 435 4555555.5678***********999766..67788***********..*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.3E-20 | 49 | 153 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.69E-20 | 51 | 153 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.39E-15 | 56 | 152 | No hit | No description |
PROSITE profile | PS50863 | 14.677 | 56 | 153 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-17 | 57 | 153 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.2E-30 | 57 | 154 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.7E-16 | 186 | 278 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.24E-17 | 187 | 275 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.67E-15 | 192 | 285 | No hit | No description |
Pfam | PF02362 | 8.5E-17 | 193 | 286 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.593 | 193 | 289 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.9E-29 | 193 | 289 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-18 | 334 | 435 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.43E-19 | 337 | 435 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.69E-16 | 340 | 434 | No hit | No description |
PROSITE profile | PS50863 | 12.266 | 341 | 435 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-25 | 341 | 436 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.3E-18 | 343 | 435 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence Send to blast |
MVLNSSDLGP SRCDIRDLPA PSSTNDQGKT ELARKKKVKR SNTEIEADAS SSDNSCFVAL 60 VTASNLRKDA LYLPQDLTSS VGLERKYREI VVTDERERRS WALDLRFNKS SDTFYISRGW 120 RSFCDENGKK PGGVFVFKLV GNRETPVLSF CSTESINDGT QGHKNNKYNC MELKSKKKRM 180 RCRDSTSPSQ NRFMTLTLTH DNLIKSRRYL PLSFTRDNGL DKPGMIFLLG KTGRKWEANL 240 LREASGRIVL TGKGWKEFAM ANGLKSGELF TLEAILEKGT PMLSLVNTQS TNYRSQQGEC 300 SRDSEKESSI CAEPSRGNKK WKATNNRKER RDSSSAIQNR YVTLTLTPED VRACTLILPS 360 QFMKANGINK LGKKTLLGQN RKKWFAYLLS KSGFVALGSG WKGFCEANGV KTGESFNLEY 420 IDEQDTTPVF KFCSNSVEYV KFTSLP |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AT2G24680 | |||||
AtGenExpress | AT2G24680 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT2G24680.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT2G24680 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC006954 | 0.0 | AC006954.8 Arabidopsis thaliana chromosome 2 clone F25P17 map mi238, complete sequence. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_180044.2 | 0.0 | transcriptional factor B3 family protein | ||||
Swissprot | P0CAP4 | 0.0 | REM12_ARATH; B3 domain-containing protein REM12 | ||||
TrEMBL | A0A1P8AXF8 | 0.0 | A0A1P8AXF8_ARATH; Transcriptional factor B3 family protein | ||||
STRING | AT2G24680.2 | 0.0 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT2G24680.1 |
Entrez Gene | 817004 |
iHOP | AT2G24680 |
wikigenes | AT2G24680 |
Publications ? help Back to Top | |||
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