PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g03630
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family B3
Protein Properties Length: 372aa    MW: 42742.5 Da    PI: 10.0934
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g03630genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.22e-15693197
               EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
               ffk l     + s+ l++p  f++++ +g  +e++t +l++  s   W+vk+  + ++    lt+GWk+F+ a++L+ gD++vF+ ++++ f  +v+++
  Tp4g03630  6 FFKPL--LPGFHSH-LTIPVAFFSKYiEGR-TEQTTAKLRTdASKINWKVKI--EDGR---KLTNGWKQFALAHDLRIGDILVFRQEKDMAF--HVTLL 93
               66666..5667777.***********8555.455799998858889******..4444...39**********************7776777..77765 PP
2B374.81e-23141221890
                -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
         B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                +++l+ + l lp++f++++g++ +++ +++l++e+g+sW++ l  +k+  r+++++GW++F++ang+k+gDf++Fkl++r ++
  Tp4g03630 141 PSTLRYDSLNLPRRFVRANGLERRCG-EIVLMNEKGKSWTLAL-KQKQCTRTYISRGWRSFCSANGVKAGDFFIFKLIKRGRT 221
                67788899************998887.****************.467777799************************986333 PP
3B354.12.8e-17276369299
                EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                ++ ++++ +lk+++l lp +f++ +g+++e  +++t+ d++g +W+ kl     ++r+ l +GWk+F kan +k+g++ ++kl++++++++v+++++k
  Tp4g03630 276 LTLTLKPFNLKKSILFLPVPFTNLYGINEE--TKMTMLDKNGVKWSTKL--HSAGKRIRLVGGWKDFFKANCVKTGESSMLKLIWEEDTSCVLQFCSK 369
                5566677789999*********99999954..58***************..88999999**********************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-193103IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.4E-223107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.337396IPR003340B3 DNA binding domain
CDDcd100175.18E-14493No hitNo description
SMARTSM010198.1E-22696IPR003340B3 DNA binding domain
PfamPF023627.9E-111489IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.3E-24131224IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-21133226IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086316.116134229IPR003340B3 DNA binding domain
CDDcd100173.32E-22134225No hitNo description
SMARTSM010194.7E-27135229IPR003340B3 DNA binding domain
PfamPF023623.0E-22141223IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.1E-18268369IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-18269368IPR015300DNA-binding pseudobarrel domain
CDDcd100173.69E-11274367No hitNo description
PfamPF023621.9E-15275369IPR003340B3 DNA binding domain
PROSITE profilePS5086312.929275369IPR003340B3 DNA binding domain
SMARTSM010192.2E-20275370IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MVNKHFFKPL LPGFHSHLTI PVAFFSKYIE GRTEQTTAKL RTDASKINWK VKIEDGRKLT  60
NGWKQFALAH DLRIGDILVF RQEKDMAFHV TLLGPSCCEI QYESCLGDEN NLEKILKKKN  120
PRREAESSVL DPSCFLANVL PSTLRYDSLN LPRRFVRANG LERRCGEIVL MNEKGKSWTL  180
ALKQKQCTRT YISRGWRSFC SANGVKAGDF FIFKLIKRGR TLVLRKSPSH KESKEEECSE  240
ADESDDEESN QDEKSFMKPR SLWKASTSSP SQNRFLTLTL KPFNLKKSIL FLPVPFTNLY  300
GINEETKMTM LDKNGVKWST KLHSAGKRIR LVGGWKDFFK ANCVKTGESS MLKLIWEEDT  360
SCVLQFCSKM KP
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g03630
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013734122.10.0putative B3 domain-containing protein REM15 isoform X1
SwissprotO230761e-113REM15_ARATH; Putative B3 domain-containing protein REM15
TrEMBLA0A3P5ZYD80.0A0A3P5ZYD8_BRACM; Uncharacterized protein
STRINGBo3g025330.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.11e-103B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]