PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g01760
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 323aa    MW: 35614.6 Da    PI: 7.5053
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g01760genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12134180455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 h  +Er+RR+++N+++  L  llP +     kK +Ka++Le A++++k+Lq
  Tp4g01760 134 EHVLAERKRRQKLNERLIALSALLPGL-----KKADKASVLEDAIKHLKQLQ 180
                5889***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.707130179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-16134191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-10134180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.95E-16134190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.86E-12135184No hitNo description
SMARTSM003534.2E-14136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007029Biological Processendoplasmic reticulum organization
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MEDSSFMDLM IDTDEYLIDD WESDFPVMSG ETTNHQNTNP GSGSESGSGF MLIPGRPTKQ  60
IKVNSTSSSP SSSSSSGSLT TPQVISFGSP DPKMNVVGTS LDFSNIANMD QNVGSKRKDC  120
GNNGGKREPH LLKEHVLAER KRRQKLNERL IALSALLPGL KKADKASVLE DAIKHLKQLQ  180
ERVKKMEEER VGTTKMDQSV ILVKRSQVYV EDDSSSYSST CSAAASPPSS SLEEVSILKQ  240
TMPMIEARVS DRDLLIRIHC EKKKGCLVKI LSSLEKFRLE VVNSFTLPFG NSTLVITILS  300
KMDNKFSRPI EDVVKNIRLA LAE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138143ERKRRQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates the expression of at least NAI2, PYK10 and PBP1. Required for and mediates the formation of endoplasmic reticulum bodies (ER bodies). Involved in the symbiotic interactions with the endophytes of the Sebacinaceae fungus family, such as Piriformospora indica and Sebacina. {ECO:0000269|PubMed:12581307, ECO:0000269|PubMed:15155889, ECO:0000269|PubMed:15919674, ECO:0000269|PubMed:18248598, ECO:0000269|PubMed:18467340, ECO:0000269|PubMed:18780803}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g01760
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018440234.10.0PREDICTED: transcription factor NAI1-like
SwissprotQ8S3F11e-163BH020_ARATH; Transcription factor NAI1
TrEMBLA0A078IRX00.0A0A078IRX0_BRANA; BnaC08g49160D protein
TrEMBLA0A0D3DVY60.0A0A0D3DVY6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FK390.0A0A3P6FK39_BRAOL; Uncharacterized protein
STRINGBo8g100870.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136071726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22770.11e-162bHLH family protein
Publications ? help Back to Top
  1. Hakenjos JP, et al.
    ML3 is a NEDD8- and ubiquitin-modified protein.
    Plant Physiol., 2013. 163(1): p. 135-49
    [PMID:23903439]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yoshii M,Yamamoto A,Kagaya Y,Takeda S,Hattori T
    The Arabidopsis transcription factor NAI1 is required for enhancing the active histone mark but not for removing the repressive mark on PYK10, a seedling-specific gene upon embryonic-to-postgerminative developmental phase transition.
    Plant Signal Behav, 2015. 10(12): p. e1105418
    [PMID:26479492]