PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp4g01350

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

CAMTA

Protein Properties

Length: 1025aa MW: 115078 Da PI: 5.0201

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp4g01350	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	182.2	5.8e-57	20	136	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101 +e ++rwl++ ei++iL+n++++++++e++t+p sgs++L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+v+vl+cyYah+++n++fqrr+yw+ Tp4g01350 20 SEaRNRWLRPPEICEILQNHQRFQISTEPPTTPASGSVFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGQDNENFQRRSYWM 119 4449********************************************************************************************** PP CG-1 102 Leeelekivlvhylevk 118 L+eel++iv+vhylevk Tp4g01350 120 LQEELSHIVFVHYLEVK 136 ************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	83.413	15	141	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.6E-84	18	136	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	6.7E-50	21	135	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	7.52E-15	451	536	IPR014756	Immunoglobulin E-set
CDD	cd00204	5.06E-11	613	743	No hit	No description
Gene3D	G3DSA:1.25.40.20	7.1E-15	614	747	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	16.733	617	743	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	3.58E-15	629	746	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	8.683	684	716	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	2.31E-8	842	896	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	0.4	845	867	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.139	847	875	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.002	848	866	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0019	868	890	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.56	869	893	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	1.6E-4	871	890	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0010150	Biological Process	leaf senescence
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005516	Molecular Function	calmodulin binding

Sequence ? help Back to Top
Protein Sequence Length: 1025 aa Download sequence Send to blast
MAEARRFSPN NELDVGQILS EARNRWLRPP EICEILQNHQ RFQISTEPPT TPASGSVFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKAGSVDVLH CYYAHGQDNE NFQRRSYWML 120 QEELSHIVFV HYLEVKGSRV STSNNRMQRT EDSARSSQET GELFTSERDG YASASINQYD 180 HSNHSQATDS ASVNGVHTPE LEDAESAYNQ QGSSIVYSHQ ELQQPATTGF DPYYQMTLTP 240 RDSYQKELRT VPITDSSIMV DKSRTINGPG VTNGLRNKKS IDSQTWEEIL GNCGSGAEGL 300 PVQPNSENEV LDQILQSYSF TMQDFASLQE SMVKSQNQEL NSVLTSDRTM WFQGQDLELN 360 AISNLASNEK APYLSTMKQH LLDGALGEEE LGELGDVGVI ADANESFTHS SSTAMWEEVE 420 SEDRSNGHNS RRDLDGYVIS PSLSKEQLFS IIDFAPSWAY VGFEVKVLVT GKFLKTREEA 480 EIGEWSCMFG QTEVPADVIA NGVLQCVAPM LEAGRVPFYV TCSNRLACSE VREFEYKVAE 540 SQVFDREKDE SSACNSIESF EARFLKLLCS KSDCLSSSPS ANDSDLSELS EKISLLLFEN 600 DDQLDQMLMN EISQENMKNN LLQEALKESL HSWLLQKIAE GGKGPNVLDE GGQGILHFAA 660 ALGYNWALEP TIVAGVSVDF RDINGWTALH WAAFFGRELI IGSLIALGAA PGTLTDPNPD 720 FPSGSTPSDL AYANGYKGIA GYLSEYALRA HVSLLSLNEK NAETSLAAVE TTPSQSSSSL 780 ADSLTAVRNA TQAAARIHQV FRAQSFQKKQ IKEFGDRKYG MSEERALSML APKTHKPGRA 840 HIDDSVQAAA IRIQNKFRGY KGRKEYLITR QRIIKIQAHV RGHQVRKNYR KIIWSVGILE 900 KVILRWRRKG AGLRGFKSDS LVDKMQDGTQ KEEDDDFFKQ GRKQTEERLE KALARVKSMV 960 QYPEARDQYR RLLNVVNDIQ ESKVEKALEN SEATCFDDDL IDIEALLEDD DDTLMLPMSS 1020 TMWNT

Sequence ? help Back to Top

Protein Sequence Length: 1025 aa Download sequence Send to blast

MAEARRFSPN NELDVGQILS EARNRWLRPP EICEILQNHQ RFQISTEPPT TPASGSVFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKAGSVDVLH CYYAHGQDNE NFQRRSYWML  120
QEELSHIVFV HYLEVKGSRV STSNNRMQRT EDSARSSQET GELFTSERDG YASASINQYD  180
HSNHSQATDS ASVNGVHTPE LEDAESAYNQ QGSSIVYSHQ ELQQPATTGF DPYYQMTLTP  240
RDSYQKELRT VPITDSSIMV DKSRTINGPG VTNGLRNKKS IDSQTWEEIL GNCGSGAEGL  300
PVQPNSENEV LDQILQSYSF TMQDFASLQE SMVKSQNQEL NSVLTSDRTM WFQGQDLELN  360
AISNLASNEK APYLSTMKQH LLDGALGEEE LGELGDVGVI ADANESFTHS SSTAMWEEVE  420
SEDRSNGHNS RRDLDGYVIS PSLSKEQLFS IIDFAPSWAY VGFEVKVLVT GKFLKTREEA  480
EIGEWSCMFG QTEVPADVIA NGVLQCVAPM LEAGRVPFYV TCSNRLACSE VREFEYKVAE  540
SQVFDREKDE SSACNSIESF EARFLKLLCS KSDCLSSSPS ANDSDLSELS EKISLLLFEN  600
DDQLDQMLMN EISQENMKNN LLQEALKESL HSWLLQKIAE GGKGPNVLDE GGQGILHFAA  660
ALGYNWALEP TIVAGVSVDF RDINGWTALH WAAFFGRELI IGSLIALGAA PGTLTDPNPD  720
FPSGSTPSDL AYANGYKGIA GYLSEYALRA HVSLLSLNEK NAETSLAAVE TTPSQSSSSL  780
ADSLTAVRNA TQAAARIHQV FRAQSFQKKQ IKEFGDRKYG MSEERALSML APKTHKPGRA  840
HIDDSVQAAA IRIQNKFRGY KGRKEYLITR QRIIKIQAHV RGHQVRKNYR KIIWSVGILE  900
KVILRWRRKG AGLRGFKSDS LVDKMQDGTQ KEEDDDFFKQ GRKQTEERLE KALARVKSMV  960
QYPEARDQYR RLLNVVNDIQ ESKVEKALEN SEATCFDDDL IDIEALLEDD DDTLMLPMSS  1020
TMWNT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:18298954, ECO:0000269\|PubMed:19122675, ECO:0000269\|PubMed:19270186, ECO:0000269\|PubMed:21900483, ECO:0000269\|PubMed:22345509, ECO:0000269\|PubMed:22371088, ECO:0000269\|PubMed:23072934, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25157030, ECO:0000269\|PubMed:28351986, ECO:0000269\|PubMed:28407487, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00042	PBM	Transfer from AT2G22300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp4g01350

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:22345509}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF506697	0.0	AF506697.1 Arabidopsis thaliana calmodulin-binding transcription factor SR1 (SR1) mRNA, complete cds.
GenBank	AK226486	0.0	AK226486.1 Arabidopsis thaliana mRNA for Calmodulin-binding transcription activator 3, complete cds, clone: RAFL06-74-H09.
GenBank	AY510025	0.0	AY510025.1 Arabidopsis thaliana ethylene-induced calmodulin-binding protein 1 mRNA, complete cds.
GenBank	BT002459	0.0	BT002459.1 Arabidopsis thaliana Unknown protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024014331.1	0.0	calmodulin-binding transcription activator 3 isoform X2
Swissprot	Q8GSA7	0.0	CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBL	V4LQS4	0.0	V4LQS4_EUTSA; Uncharacterized protein
STRING	XP_006404687.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8601	25	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	signal responsive 1

Publications ? help Back to Top
Zhang L,Du L,Shen C,Yang Y,Poovaiah BW Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling. Plant J., 2014. 78(2): p. 269-81 [PMID:24528504] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae. Front Plant Sci, 2016. 7: p. 177 [PMID:26973658] Benn G, et al. Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60 [PMID:27432993] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lolle S, et al. Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles. Cell Host Microbe, 2017. 21(4): p. 518-529.e4 [PMID:28407487] Kim YS, et al. CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection. Plant Cell, 2017. 29(10): p. 2465-2477 [PMID:28982964] Jacob F, et al. A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. New Phytol., 2018. 217(4): p. 1667-1680 [PMID:29226970]