PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp3g33510 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | C3H | ||||||||
Protein Properties | Length: 364aa MW: 41795.9 Da PI: 5.0242 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.3 | 2e-06 | 90 | 113 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k lC ff + G+C+ G +CkF+H+ Tp3g33510 90 KSILCEFFKA-GQCQKGFKCKFSHD 113 6679**7777.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 5.89E-6 | 88 | 113 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.272 | 88 | 115 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.7E-5 | 88 | 114 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-4 | 90 | 113 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.793 | 159 | 197 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.1 | 159 | 196 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF16543 | 5.7E-16 | 217 | 297 | IPR032378 | ZC3H15/TMA46 family, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MPPKQQPKAD LAKKQKQVED KTFGLKNKNK SKNVQKYVQS LKQSVQPKPD ASKAAAKKKK 60 EEEKAREQEL NELFKVAISQ PKVPVGVDPK SILCEFFKAG QCQKGFKCKF SHDLNIQRKG 120 EKIDIYSDKR DEDGTMEEWD QETLEKVVES KKNEYNQNKP TDIVCKYFLD AVEKKQYGWF 180 WACPNGAKEC HYRHALPPGY ILKSQMKALL EEESQKMPVE EEIENERAKL KTATQMTPAL 240 FMEWKRKKIA ERDAGLAASQ AERAKNDRMS GRELFLSNAS LFVDDAEAFE EYQREKEEEE 300 IEQKAKNKET EAGTSKSSGD TKQSSKEVDE EDDDDDDDLD MDELDELEAS LSKTSIQIRE 360 PNNG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp3g33510 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189570 | 9e-84 | AC189570.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009P18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006408943.1 | 0.0 | zinc finger CCCH domain-containing protein 21 | ||||
Swissprot | Q9SK74 | 0.0 | C3H21_ARATH; Zinc finger CCCH domain-containing protein 21 | ||||
TrEMBL | V4NUF5 | 0.0 | V4NUF5_EUTSA; Uncharacterized protein | ||||
STRING | XP_006408943.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4874 | 23 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20280.1 | 0.0 | C3H family protein |