PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp3g33170

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

C3H

Protein Properties

Length: 357aa MW: 39701.2 Da PI: 6.4174

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp3g33170	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.6	1.8e-07	122	142	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G C+ Gd C F+Hg Tp3g33170 122 ACPDFRK-GSCSKGDACEFSHG 142 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	2.7E-5	117	143	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.3	118	144	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.9E-4	121	144	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.5E-5	122	142	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	0.001	149	180	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.568	152	176	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.53	152	175	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006979	Biological Process	response to oxidative stress
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0010150	Biological Process	leaf senescence
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MMIGETHRVY PTVHIPPWPL SDDLTAADIY GSPDGGNTTI EALAALQRYL PSNEPDPDSD 60 PDLSGPDSPI DAYSCDHFRM YEFKVRRCAR GRSHDWTECP YAHPGEKARR RDPRKYHYSG 120 TACPDFRKGS CSKGDACEFS HGVFECWLHP ARYRTQPCKD GGNCRRRVCF FAHSPDQLRV 180 LPNQSPDRVD SFDGMSPIRR AFQFSISPSS GSPPVSPRAD SESSSLLSRS LGSGSVNDVV 240 ASLRNLQLNK VKSLPSSYNN QIRCYGSGFG SPRGSVLGPG FRSLPNTPTR PEIGYMDIWD 300 NGLEEEPAME RVESGRELRA KMFEKLSKEN CADRVDPDPY QSPGEAPDVG WVSELVM

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MMIGETHRVY PTVHIPPWPL SDDLTAADIY GSPDGGNTTI EALAALQRYL PSNEPDPDSD  60
PDLSGPDSPI DAYSCDHFRM YEFKVRRCAR GRSHDWTECP YAHPGEKARR RDPRKYHYSG  120
TACPDFRKGS CSKGDACEFS HGVFECWLHP ARYRTQPCKD GGNCRRRVCF FAHSPDQLRV  180
LPNQSPDRVD SFDGMSPIRR AFQFSISPSS GSPPVSPRAD SESSSLLSRS LGSGSVNDVV  240
ASLRNLQLNK VKSLPSSYNN QIRCYGSGFG SPRGSVLGPG FRSLPNTPTR PEIGYMDIWD  300
NGLEEEPAME RVESGRELRA KMFEKLSKEN CADRVDPDPY QSPGEAPDVG WVSELVM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp3g33170

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353143	0.0	AK353143.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-21-D05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013743556.1	0.0	zinc finger CCCH domain-containing protein 20-like
Refseq	XP_013743557.1	0.0	zinc finger CCCH domain-containing protein 20-like
Swissprot	O82199	0.0	C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBL	A0A3P6EV56	0.0	A0A3P6EV56_BRAOL; Uncharacterized protein
STRING	Bo7g005390.1	0.0	(Brassica oleracea)
STRING	XP_006408900.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1249	27	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	0.0	C3H family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Swain S,Singh N,Nandi AK Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant. J. Biosci., 2015. 40(1): p. 137-46 [PMID:25740148] Singh N,Swain S,Singh A,Nandi AK AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling. Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333 [PMID:29327969]