PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g30340
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family NAC
Protein Properties Length: 285aa    MW: 32832.7 Da    PI: 8.8425
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g30340genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM150.58.1e-4781343128
        NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelv 100
                pGfrFhPt+eelv++yLk+ v gk  ++ evi  ++iy+++PwdLp   + +e+ewyfF++r++k+ +g r++r+t++gyWkatg+d++++s    ++++
  Tp3g30340   8 PGFRFHPTEEELVDFYLKNMVYGKLSKV-EVIGFLNIYRHDPWDLPGLSTIGEREWYFFVPRERKHGNGGRPSRTTEKGYWKATGSDRKIISLsePKRVI 106
                9************************999.99***************7667799*************************************987557778* PP

        NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
                glkktLvfy+grap g+ktdWvm+e+r+
  Tp3g30340 107 GLKKTLVFYRGRAPGGSKTDWVMNEFRM 134
                **************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100553.5356152IPR003441NAC domain
SuperFamilySSF1019415.23E-557152IPR003441NAC domain
PfamPF023653.9E-258134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0010200Biological Processresponse to chitin
GO:0045792Biological Processnegative regulation of cell size
GO:0048281Biological Processinflorescence morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MAKEIELPGF RFHPTEEELV DFYLKNMVYG KLSKVEVIGF LNIYRHDPWD LPGLSTIGER  60
EWYFFVPRER KHGNGGRPSR TTEKGYWKAT GSDRKIISLS EPKRVIGLKK TLVFYRGRAP  120
GGSKTDWVMN EFRMPDNCTL PKDVVLCKIY RKATSLKVLE QRAEMEAKMN QTCPNSPLSS  180
PDNTSFVGKE EDLMMNSFLF PQAETMKDVN NNFMLQGHTE NAKNEQKQRE AERKEPSPSL  240
KLPCGVLPLP ELQLPKQGFE WGQDQFLSIS PWLQNLTPIV NLLNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-44815519168NO APICAL MERISTEM PROTEIN
1ut4_B4e-44815519168NO APICAL MERISTEM PROTEIN
1ut7_A4e-44815519168NO APICAL MERISTEM PROTEIN
1ut7_B4e-44815519168NO APICAL MERISTEM PROTEIN
3swm_A4e-44815522171NAC domain-containing protein 19
3swm_B4e-44815522171NAC domain-containing protein 19
3swm_C4e-44815522171NAC domain-containing protein 19
3swm_D4e-44815522171NAC domain-containing protein 19
3swp_A4e-44815522171NAC domain-containing protein 19
3swp_B4e-44815522171NAC domain-containing protein 19
3swp_C4e-44815522171NAC domain-containing protein 19
3swp_D4e-44815522171NAC domain-containing protein 19
4dul_A4e-44815519168NAC domain-containing protein 19
4dul_B4e-44815519168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g30340
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533070.0AK353307.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-40-I17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018457954.10.0PREDICTED: NAC domain-containing protein 35-like
SwissprotQ10S652e-90NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A398A4C40.0A0A398A4C4_BRACM; Uncharacterized protein
TrEMBLM4D9740.0M4D974_BRARP; Uncharacterized protein
STRINGBra013034.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38992860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.11e-173NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]