PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g27940
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 325aa    MW: 36460.5 Da    PI: 5.1755
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g27940genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.22e-102512911055
                HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Tp3g27940 251 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 291
                9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148241290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-14242307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-12246300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-11247296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.69E-11250295No hitNo description
PfamPF000109.8E-8251291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEPMGEWSNG LGGMYTEEAD FMNQLLASYD QTCGGSSSET TATIAAYHRQ NAHWTGSFCF  60
SQESSSYSAG HNGYYTVMPP REENNNGMED VTVNTNLYLV GEETNECEVA EYSGKTILPL  120
ETVEENHDHD TLQPKISLTT TNVQKQFKTC ESSKKRSRAT STDKNKRANK ARRCQRSMEM  180
SDDNNNSGEE EETVKATGRK KTKPLKVQKT CCSDDESNCK EDGDDPKALN LSGKTRASRG  240
AATDPQSLYA RKRRERINER LRILQNLVPN GTKVDISTML EEAVQYVKFL QLQIKLLSSD  300
DLWMYAPIAY NGMDIGLDMK LNSLI
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g27940
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5775841e-115AJ577584.1 Arabidopsis thaliana mRNA for putative bHLH084 transcription factor (bHLH084 gene).
GenBankDQ4464971e-115DQ446497.1 Arabidopsis thaliana clone pENTR221-At2g14760 basic helix-loop-helix protein/bHLH protein (At2g14760) mRNA, complete cds.
GenBankDQ6529851e-115DQ652985.1 Arabidopsis thaliana clone 0000009730_0000007191 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020888660.10.0transcription factor bHLH84
SwissprotQ7XHI90.0BH084_ARATH; Transcription factor bHLH84
TrEMBLD7L2Q60.0D7L2Q6_ARALL; Basic helix-loop-helix protein
STRINGfgenesh2_kg.3__3067__AT2G14760.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28342663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-163bHLH family protein