PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp3g21910 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | GATA | ||||||||
Protein Properties | Length: 280aa MW: 30816.3 Da PI: 7.4642 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 63.2 | 3e-20 | 204 | 238 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+ kTp+WR gp+g+ktLCnaCG++y++ +l Tp3g21910 204 CQHCGADKTPQWRAGPSGPKTLCNACGVRYKSGRL 238 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.1E-17 | 198 | 248 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.347 | 198 | 234 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.8E-15 | 201 | 261 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.4E-15 | 202 | 236 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.28E-16 | 203 | 252 | No hit | No description |
Pfam | PF00320 | 8.0E-18 | 204 | 238 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 204 | 229 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MEMESFMDDL LNFSVPEEEE DDVEGRGVVV RSPRNITRRK TGLRQTDSFG LLNPDDPGDV 60 EEEDLEWISN KDAFPVIETF VGVLPPEHFS VSSPERETGE VKQLSPVSVL ETSSHNSTLT 120 TTTTTSNSSG GSNGSTAAAP ASTTAMMSFF FGYNVPTKAR SKRRRTGRRD LRILWTGNNE 180 QGGEPQKRKT PSVAAATVVM GRKCQHCGAD KTPQWRAGPS GPKTLCNACG VRYKSGRLVP 240 EYRPANSPTF SPELHSNSHR KIVEMRKQFM SGDVDRKDCG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00377 | DAP | Transfer from AT3G24050 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp3g21910 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024009589.1 | 1e-138 | GATA transcription factor 1 | ||||
Swissprot | Q8LAU9 | 1e-116 | GATA1_ARATH; GATA transcription factor 1 | ||||
TrEMBL | V4MXL8 | 1e-136 | V4MXL8_EUTSA; Uncharacterized protein | ||||
STRING | XP_006418795.1 | 1e-137 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12987 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24050.1 | 1e-114 | GATA transcription factor 1 |