PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp3g19920

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

bHLH

Protein Properties

Length: 310aa MW: 34912.7 Da PI: 8.2982

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp3g19920	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.8	1.9e-08	189	227	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR++i +++ L +l+P+ kK+s a++Le++ +YI Lq Tp3g19920 189 RRRKISDKIRSLEKLMPWE-----KKMSLATVLEETHKYITFLQ 227 9***************9.....8**************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.433	177	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-8	188	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.24E-8	189	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-5	189	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.33E-5	189	231	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MESVYEFDSL SELPPLPQVY DPMEYSRSYP YATTPLESLP PFPYSDFTHS GGVTFSDHRQ 60 DLLHLQQQNV DSFFLDSSLS LLTRNYLTES TRCEKLYSVN DVVATPFLHL PDLKSLEHTT 120 AVEDTKPPFL SLAPPLPVAK HDASVKRRCL GSRVRSTFTI SPSSSSKARS PAARSSSSSL 180 SQSIYGTDRR RKISDKIRSL EKLMPWEKKM SLATVLEETH KYITFLQSQI ASLRWMPLES 240 VYPTKPGEEI GETNLLQSLT RQQILQVIAN SPGSRNMLCS RGVCVFSYEQ LLSVKMMAES 300 ARNVLNKTTS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp3g19920

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013646677.1	1e-114	transcription factor bHLH117-like
Refseq	XP_013741191.1	1e-114	transcription factor bHLH117
Swissprot	Q9LRJ4	5e-78	BH117_ARATH; Transcription factor bHLH117
TrEMBL	A0A078HGA3	1e-113	A0A078HGA3_BRANA; BnaC05g30500D protein
TrEMBL	A0A3P6FIC9	1e-113	A0A3P6FIC9_BRAOL; Uncharacterized protein
STRING	Bra031324.1-P	1e-112	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13399	22	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22100.1	5e-70	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]